View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8621_high_8 (Length: 304)
Name: NF8621_high_8
Description: NF8621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8621_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 37835295 - 37835571
Alignment:
| Q |
18 |
actagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactca |
117 |
Q |
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| T |
37835295 |
actagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactca |
37835394 |
T |
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| Q |
118 |
tgacacactggacttttattcgtccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgactataatca |
217 |
Q |
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| T |
37835395 |
tgacacactggacttttattcctccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgactataatca |
37835494 |
T |
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| Q |
218 |
tcataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattgtgaaccttcatc |
294 |
Q |
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| T |
37835495 |
tcataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattttgaaccttcatc |
37835571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 44 - 282
Target Start/End: Original strand, 37840943 - 37841178
Alignment:
| Q |
44 |
actcttgttgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactcatgacacactggacttttattcgtcct |
143 |
Q |
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| T |
37840943 |
actcttgttgattgtttccttcttgcatggtggttttgcacttaccactgatgggttgactctgttgtcactcttgactcactggacctttgttcctcct |
37841042 |
T |
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| Q |
144 |
tttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgactataatcatcataatgtcatttctcttaacctca |
243 |
Q |
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| T |
37841043 |
ctcatcaactctagttggaaagcttctgattcaattccatgctcatgggttggtgttcaatgtgaccat-acca--acaatgtcatttccattaatctca |
37841139 |
T |
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| Q |
244 |
ctagtcgtgggatttttggtcaacttgggacagaaattg |
282 |
Q |
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| T |
37841140 |
ctaaccatgggattcttggtcaacttggaccagaaattg |
37841178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 37829593 - 37829855
Alignment:
| Q |
20 |
tagttgtagcagtaaattcattacactcttgttg---attatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactc |
116 |
Q |
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|||||||||||||||| | || ||| |||||||| |||||||||||||| || ||| | |||||||||||||||| |||| || |||||||| |
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| T |
37829593 |
tagttgtagcagtaaaattatcacaatcttgttgtcgattatttccttcttctatggtgctactgctcttacctctgatggtttgactttgatgtcactc |
37829692 |
T |
|
| Q |
117 |
atgacacactggacttttattcgtccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgactataatc |
216 |
Q |
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| T |
37829693 |
ttgacacgttggacctttgttcctccgctaatcaactctagttggaaggcttctgattccgatccatgctcatgggttggtgttcaatgtgaccata--- |
37829789 |
T |
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| Q |
217 |
atcataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattg |
282 |
Q |
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| T |
37829790 |
cttataatgtcatttcccttagcctcactggtcatgggattattggtcaacttggaccagaaattg |
37829855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 37848697 - 37848864
Alignment:
| Q |
42 |
acactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactcatgacacactggacttttattcgtc |
141 |
Q |
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|||| |||||||| ||||||||| |||||| ||| | |||||| || |||||| |||| |||||||||||||||||| ||||||| || ||| || |
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| T |
37848697 |
acacacttgttgactatttcctttttgcatggtgctactgctcttaactatgatggtttgactctgttgtcactcatgacagactggaccattgttcctc |
37848796 |
T |
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| Q |
142 |
cttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgac |
209 |
Q |
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| T |
37848797 |
ctatcatcgactctagctggaatccttctgattccaatccatgctcatgggttggtgttcgatgtgac |
37848864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 35025783 - 35025714
Alignment:
| Q |
61 |
ccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactcatgacacactggac |
130 |
Q |
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| T |
35025783 |
ccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactcttgacacactggac |
35025714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 12281301 - 12281514
Alignment:
| Q |
18 |
actagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactca |
117 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
12281301 |
actagtcgtagcagtaaattcattacactcctgttgattatttccttcttgcatagtggtttgactcttacctctaatgggttgatactgttgtcattca |
12281400 |
T |
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| Q |
118 |
tgacacactggacttttattcgtccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgactataatca |
217 |
Q |
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| T |
12281401 |
tgacacactggacttttattcctccttttatcaaatccacctggaatgcctctgattcaactccatgctcatgggttggtgtttaatgtgacta-----a |
12281495 |
T |
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| Q |
218 |
tcataatgtcatttctctt |
236 |
Q |
| |
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| T |
12281496 |
tcataatgtcatttctctt |
12281514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 52 - 282
Target Start/End: Original strand, 36864093 - 36864320
Alignment:
| Q |
52 |
tgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactcatgacacactggacttttattcgtccttttatcaa |
151 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||| |||| ||||||||| ||||||||||| |||| |||||||| ||| ||| |||| | ||||| |
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| T |
36864093 |
tgattatttccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggacctttgttcctcctctcatcaa |
36864192 |
T |
|
| Q |
152 |
atctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgactataatcatcataatgtcatttctcttaacctcactagtcgt |
251 |
Q |
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|||| |||||| || |||||||| |||||| |||||| ||||||||||||| ||| || | || ||| | ||||| |||||||| | ||||| | |
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| T |
36864193 |
ctctagctggaaggcttctgattccgatccatgttcatggtttggtgttcaatgcgaccgta---agcagaatttgatttcacttaaccttaatagtcat |
36864289 |
T |
|
| Q |
252 |
gggatttttggtcaacttgggacagaaattg |
282 |
Q |
| |
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| |||||||||||||||||| ||||||||| |
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| T |
36864290 |
gagatttttggtcaacttggaccagaaattg |
36864320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 12281519 - 12281548
Alignment:
| Q |
264 |
caacttgggacagaaattgtgaaccttcat |
293 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
12281519 |
caacttgggacagaaattgtgaaccttcat |
12281548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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