View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8621_low_1 (Length: 1043)

Name: NF8621_low_1
Description: NF8621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8621_low_1
NF8621_low_1
[»] chr5 (3 HSPs)
chr5 (15-1030)||(14312421-14313435)
chr5 (225-367)||(2310807-2310949)
chr5 (226-322)||(28661249-28661345)
[»] chr3 (5 HSPs)
chr3 (228-365)||(27009307-27009442)
chr3 (277-330)||(2004331-2004384)
chr3 (593-674)||(27008875-27008958)
chr3 (516-576)||(27008956-27009016)
chr3 (249-319)||(8642438-8642508)
[»] chr4 (4 HSPs)
chr4 (520-663)||(37127894-37128037)
chr4 (227-322)||(37500791-37500886)
chr4 (224-322)||(15333039-15333130)
chr4 (303-365)||(37127520-37127582)
[»] chr7 (2 HSPs)
chr7 (516-660)||(35064353-35064497)
chr7 (227-365)||(35063908-35064046)
[»] chr1 (3 HSPs)
chr1 (230-322)||(51739557-51739649)
chr1 (226-324)||(49835076-49835174)
chr1 (228-317)||(43276554-43276643)
[»] chr8 (3 HSPs)
chr8 (227-357)||(518879-519009)
chr8 (623-674)||(519404-519457)
chr8 (284-330)||(16920529-16920575)


Alignment Details
Target: chr5 (Bit Score: 886; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 886; E-Value: 0
Query Start/End: Original strand, 15 - 1030
Target Start/End: Original strand, 14312421 - 14313435
Alignment:
Q  15 gacatcataatctaacattaaatagtgaagtctcagatattgttcctcgtatcagacttaatattagaacctttaagttgtcaataatcattaccataac 114  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14312421 gacatcataatcaaacattaaacagtgaagtctcagatattgttcctcgtatcagacttaatattagaacctttaagttgtcaataatcattaccataac 14312520  T
Q  115 ttttagttattgctgaaaactattccgatagtataattgaattccagataagattgtcaaaataaattcagccaatagaaaatttgaggcaactgattgc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14312521 ttttagttattgctgaaaactattccgatagtataattgaattccagataagattgtcaaaataaattcagccaatagaaaatttgaggcaactgattgc 14312620  T
Q  215 aaaatttggaaccatggttgacaaactcgggatttcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14312621 aaaatttggaaccatggttgacaaactcgggatttcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatc 14312720  T
Q  315 ccaccaaatacacaaagttacaggaataactgaggaaaataaccttaccataannnnnnnnngttaatttaatcataaagatgagagtttaaacaaaaca 414  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| |||||||||    
T  14312721 ccaccaaatacacaaaattataggaataactgaggaaaataaccttaccataatttttttt-gttaatttaatcataaagatgagagtttgaacaaaaca 14312819  T
Q  415 taaattatacaatgcaatttctctcacttaaaacccactgagtccnnnnnnnnnntgcaagttcaatgtatccctccctttcaatgataaacgggtcaaa 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||    
T  14312820 taaattatacaatgcaatttctctcacttaaaacccactgagtccaaaaaaaaaatgcaagttcaatgtatccctccctttcaatgataaacgggtcaaa 14312919  T
Q  515 ctccaagtcaaaacatgtgaaactgggctgtgaaggtgggagcttttccgggtcagccgggtcgagatgtacaacccaggttgagaacgtgtgaaaacag 614  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14312920 ctccaagtcaaaacatgtgaaactgggctgtgaaggtgggagctgttccgggtcagccgggtcgagatgtacaacccaggttgagaacgtgtgaaaacgg 14313019  T
Q  615 cgcaagggaaagcgccgctcccacgattccaagatcttcctctgcgcgcaccgctccggcacggcggagagagaataacacatgagatctcacaatatat 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||    
T  14313020 cgcaagggaaagcgccgctcccacgattccaagatcttcctctgcgcgcaccgctccggcacggtggagagagaaaaacacatgagatctcacaatctat 14313119  T
Q  715 atcacgctcttaataaccattcttggaacaacaaatgtctgaatgctgaattgaaacatagcctcaaataaataagaactacttaatatcagattttgca 814  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14313120 atcacgctcttaacaaccattcttggaacaacaaatgtctgaatgctgaattgaaacatagcctcaaataaataagcactacttaatatcagattttgca 14313219  T
Q  815 ctggtcagagtgtatgcctatatctattgaaaactagattaacaacggtctggaacatagagcctgatgcaaccaagaaacattgagtagaaccaaagta 914  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14313220 ctggtcagagtgtatgcctatatctattgaaaactagattaacaacggtctggaacattgagcctgatgcaaccaagaaacattgagtagaaccaaagta 14313319  T
Q  915 gacgagaaagccaaaccaaaaatgactaccaaatgaccgcagtttctaattaaaaagcttaaaaaacaaattagtgtggcaagattataaattataaaac 1014  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||    
T  14313320 tacgagaaagccaaaccaaaaatgactaccaaatgaccgcagtttctaattgacaagcttaaaaaacaaattagtgtggcaagattataaattctaaaac 14313419  T
Q  1015 aataccgtgatgtcca 1030  Q
    ||||||||||||||||    
T  14313420 aataccgtgatgtcca 14313435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 225 - 367
Target Start/End: Complemental strand, 2310949 - 2310807
Alignment:
Q  225 accatggttgacaaactcgggatttcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatcccaccaaata 324  Q
    |||||||||| ||||||||||||| || |||| ||||||||||| || |||||| | |||||| | ||||||||||| ||||||||||||||||||||||    
T  2310949 accatggttgtcaaactcgggattccatcaaagatcgtttgggtattgaaaaagtgtaaatcgcaggatcgtaacacggatcgtaagatcccaccaaata 2310850  T
Q  325 cacaaagttacaggaataactgaggaaaataaccttaccataa 367  Q
    |||||| ||| |||||||||  || |||||||||||| |||||    
T  2310849 cacaaaattataggaataacaaagaaaaataaccttaacataa 2310807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 28661249 - 28661345
Alignment:
Q  226 ccatggttgacaaactcgggatttcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatcccaccaaa 322  Q
    |||||||||  ||| ||||||| ||||| || ||||||||| | || ||||| || ||||||||||||||||||  |||||||||||||||||||||    
T  28661249 ccatggttgttaaaatcgggatctcacctaagatcgtttggatattgaaaaatcgtaaatcgtaagatcgtaaccaagatcgtaagatcccaccaaa 28661345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 228 - 365
Target Start/End: Complemental strand, 27009442 - 27009307
Alignment:
Q  228 atggttgacaaactcgggatttcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatcccaccaaatacac 327  Q
    ||||||| |||||| ||||||  |||||| ||||||||||| | |||||||||||||| ||| ||||||||| | |||||||||||| ||||||  ||||    
T  27009442 atggttgtcaaacttgggattcaaccaaagatcgtttgggtgtaaaaaaagcgcaaatagtaggatcgtaactcggatcgtaagatctcaccaa--acac 27009345  T
Q  328 aaagttacaggaataactgaggaaaataaccttaccat 365  Q
    ||| ||| |||||||||| || |||||||| |||||||    
T  27009344 aaaattataggaataactaagaaaaataactttaccat 27009307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 2004331 - 2004384
Alignment:
Q  277 agcgcaaatcgtaagatcgtaacacagatcgtaagatcccaccaaatacacaaa 330  Q
    |||| |||||||||||||||||||  ||||||||||||||||| |||| |||||    
T  2004331 agcgtaaatcgtaagatcgtaacaaggatcgtaagatcccacctaatagacaaa 2004384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 593 - 674
Target Start/End: Complemental strand, 27008958 - 27008875
Alignment:
Q  593 ggttgagaacgtgtgaaaacagcgcaagggaaagcgccgctcccacgattccaagatcttcctctgcgcg--caccgctccggc 674  Q
    |||| ||||||||||||| |||| |  |  ||||||| ||||| |||||| |||||||||||||||||||  ||||||||||||    
T  27008958 ggttaagaacgtgtgaaaccagcacgggataaagcgctgctcctacgatttcaagatcttcctctgcgcgctcaccgctccggc 27008875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 516 - 576
Target Start/End: Complemental strand, 27009016 - 27008956
Alignment:
Q  516 tccaagtcaaaacatgtgaaactgggctgtgaaggtgggagcttttccgggtcagccgggt 576  Q
    ||||||||||||| ||||||||| |||||| |||||| | | | |||||||||||||||||    
T  27009016 tccaagtcaaaacgtgtgaaactaggctgtaaaggtgcgggttgttccgggtcagccgggt 27008956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 8642438 - 8642508
Alignment:
Q  249 tcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatcccacc 319  Q
    ||||| || ||||||||||| |  ||||| || ||||||| |||||||||||  |||||||||||||||||    
T  8642438 tcacccaagatcgtttgggtatagaaaaatcgtaaatcgtgagatcgtaacaaggatcgtaagatcccacc 8642508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 520 - 663
Target Start/End: Original strand, 37127894 - 37128037
Alignment:
Q  520 agtcaaaacatgtgaaactgggctgtgaaggtgggagcttttccgggtcagccgggtcgagatgtacaacccaggttgagaacgtgtgaaaacagcgcaa 619  Q
    ||||||||| || ||||||||||||| |||||| | | | |||||||||| ||||||| |||||| | |||| |||| ||||||||||||| |||| |      
T  37127894 agtcaaaacgtgcgaaactgggctgtaaaggtgcgggttgttccgggtcaaccgggtcaagatgtgcgacccgggttaagaacgtgtgaaaccagcacgg 37127993  T
Q  620 gggaaagcgccgctcccacgattccaagatcttcctctgcgcgc 663  Q
    |  ||||||| | ||| ||||||||||||||||||||| |||||    
T  37127994 gataaagcgctgatcctacgattccaagatcttcctctacgcgc 37128037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 322
Target Start/End: Original strand, 37500791 - 37500886
Alignment:
Q  227 catggttgacaaactcgggatttcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatcccaccaaa 322  Q
    |||||||| |||| ||||||| ||||| || |||  | |||| || ||||| || |||||||| |||||||||| |||||||||||||||||||||    
T  37500791 catggttgtcaaaatcgggatctcacctaagatctctagggtattgaaaaatcgtaaatcgtaggatcgtaacaaagatcgtaagatcccaccaaa 37500886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 322
Target Start/End: Original strand, 15333039 - 15333130
Alignment:
Q  224 aaccatggttgacaaactcgggatttcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatcccaccaaa 322  Q
    ||||||||||| |||| ||||||| ||||| || ||||||||||| || |||||       |||||||||||||||  |||||||||||||||||||||    
T  15333039 aaccatggttgtcaaaatcgggatctcacctaagatcgtttgggtattgaaaaa-------tcgtaagatcgtaaccaagatcgtaagatcccaccaaa 15333130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 37127520 - 37127582
Alignment:
Q  303 gatcgtaagatcccaccaaatacacaaagttacaggaataactgaggaaaataaccttaccat 365  Q
    |||||||||||| ||||||| | ||||| ||| |||||||||| || |||||||| |||||||    
T  37127520 gatcgtaagatctcaccaaacagacaaaattataggaataactaagaaaaataactttaccat 37127582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 516 - 660
Target Start/End: Original strand, 35064353 - 35064497
Alignment:
Q  516 tccaagtcaaaacatgtgaaactgggctgtgaaggtgggagcttttccgggtcagccgggtcgagatgtacaacccaggttgagaacgtgtgaaaacagc 615  Q
    ||||||||||||| ||  |||||||||||| |||||| | | | |||| ||||| ||||||| |||||| | |||| |||| ||||||||||||| ||||    
T  35064353 tccaagtcaaaacgtgcaaaactgggctgtaaaggtgcgggttgttccaggtcaaccgggtcaagatgtgcgacccgggttaagaacgtgtgaaaccagc 35064452  T
Q  616 gcaagggaaagcgccgctcccacgattccaagatcttcctctgcg 660  Q
     |  |  ||||||| | ||| ||||||||||||||||||||||||    
T  35064453 acgggataaagcgctgatcctacgattccaagatcttcctctgcg 35064497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 227 - 365
Target Start/End: Original strand, 35063908 - 35064046
Alignment:
Q  227 catggttgacaaactcgggatttcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatcccaccaaataca 326  Q
    |||||||| |||| | ||||||  |||||| | |||||| || | ||||||||| ||||| || ||||||||| | |||||||||||| ||||||| | |    
T  35063908 catggttgtcaaatttgggattcaaccaaagaccgtttgcgtgtaaaaaaagcgtaaatcataggatcgtaactcggatcgtaagatctcaccaaacaga 35064007  T
Q  327 caaagttacaggaataactgaggaaaataaccttaccat 365  Q
    |||| ||| |||||||||| || |||||||| |||||||    
T  35064008 caaaattataggaataactaagaaaaataactttaccat 35064046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 230 - 322
Target Start/End: Complemental strand, 51739649 - 51739557
Alignment:
Q  230 ggttgacaaactcgggatttcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatcccaccaaa 322  Q
    ||||| |||| ||||||| ||||| || ||||||||||| || ||||| || |||||||| |||||||||| |||||||||||||||||||||    
T  51739649 ggttgtcaaaatcgggatctcacctaagatcgtttgggtattgaaaaatcgtaaatcgtaggatcgtaacaaagatcgtaagatcccaccaaa 51739557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 226 - 324
Target Start/End: Complemental strand, 49835174 - 49835076
Alignment:
Q  226 ccatggttgacaaactcgggatttcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatcccaccaaata 324  Q
    ||||||||| |||| ||||||| |||| ||| |||||| |||| |  |||||||| | |||||| |||||||||| |||||||||||||||||||||||    
T  49835174 ccatggttgtcaaaatcgggatctcactaaagatcgttggggtatggaaaaagcgtagatcgtaggatcgtaacaaagatcgtaagatcccaccaaata 49835076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 43276643 - 43276554
Alignment:
Q  228 atggttgacaaactcgggatttcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatccca 317  Q
    ||||||| ||||||||||||  |||| || ||||||||||  |  ||| |||| ||||| || ||||||||||| |||||||||||||||    
T  43276643 atggttgtcaaactcgggatcccaccgaagatcgtttgggcatagaaagagcgtaaatcataggatcgtaacacggatcgtaagatccca 43276554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 227 - 357
Target Start/End: Original strand, 518879 - 519009
Alignment:
Q  227 catggttgacaaactcgggatttcaccaaatatcgtttgggttttaaaaaagcgcaaatcgtaagatcgtaacacagatcgtaagatcccaccaaataca 326  Q
    |||||||| |||| ||||||||  |||||| ||||||||||  | ||||||||| ||||||||||||||||||    ||||||||||| ||||||| | |    
T  518879 catggttgtcaaattcgggattcaaccaaagatcgtttgggcgtaaaaaaagcgtaaatcgtaagatcgtaactagaatcgtaagatctcaccaaacaga 518978  T
Q  327 caaagttacaggaataactgaggaaaataac 357  Q
    |||| ||| ||||||| || || ||||||||    
T  518979 caaaattataggaatagctaagaaaaataac 519009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 623 - 674
Target Start/End: Original strand, 519404 - 519457
Alignment:
Q  623 aaagcgccgctcccacgattccaagatcttcctc--tgcgcgcaccgctccggc 674  Q
    ||||||| ||||| ||||||||||||||||||||  ||||| ||||||||||||    
T  519404 aaagcgctgctcctacgattccaagatcttcctctgtgcgctcaccgctccggc 519457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 284 - 330
Target Start/End: Original strand, 16920529 - 16920575
Alignment:
Q  284 atcgtaagatcgtaacacagatcgtaagatcccaccaaatacacaaa 330  Q
    |||||| ||| ||||||| |||||||||||||||||||||| |||||    
T  16920529 atcgtaggattgtaacacggatcgtaagatcccaccaaatagacaaa 16920575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University