View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8621_low_11 (Length: 362)

Name: NF8621_low_11
Description: NF8621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8621_low_11
NF8621_low_11
[»] chr8 (1 HSPs)
chr8 (113-341)||(32720639-32720868)
[»] chr6 (2 HSPs)
chr6 (11-115)||(14843772-14843876)
chr6 (15-47)||(14686711-14686743)
[»] chr1 (5 HSPs)
chr1 (11-115)||(3544736-3544840)
chr1 (11-112)||(1248223-1248324)
chr1 (13-48)||(13867535-13867570)
chr1 (13-48)||(45795609-45795644)
chr1 (13-42)||(5808984-5809013)
[»] chr5 (1 HSPs)
chr5 (11-115)||(476614-476718)
[»] scaffold0043 (1 HSPs)
scaffold0043 (11-115)||(34244-34348)
[»] chr3 (3 HSPs)
chr3 (11-115)||(31675332-31675436)
chr3 (11-115)||(31920986-31921090)
chr3 (11-48)||(34829820-34829857)
[»] chr4 (1 HSPs)
chr4 (13-48)||(43516450-43516485)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 113 - 341
Target Start/End: Original strand, 32720639 - 32720868
Alignment:
Q  113 tccaaatcctaattctaataattgattttaatattaattaatggttgtgatcaattaaaccaatatgaggtgtctcaatcgtacatacattatcttgatc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  32720639 tccaaatcctaattctaataattgattttaatattaattaatggttgtgatcaattaaaccgatatgaggtgtctcaaccgtacatacattatcttgatc 32720738  T
Q  213 ttgtactttctgtagaggaatttgaatgaaccaggacaacttga-nnnnnnnncttcaatcttttgtgtcatttggattatataaaggaaactcaaaaaa 311  Q
    |||||||||||| |||||| ||||||||||||||||||||||||         |||||||||||||||| |||||||||||||||| ||||||| |||||    
T  32720739 ttgtactttctgcagaggactttgaatgaaccaggacaacttgatttttttttcttcaatcttttgtgtgatttggattatataaatgaaactcgaaaaa 32720838  T
Q  312 ttgtctgaattataacatccaaaaatgaaa 341  Q
    ||||||||||||||||||||||||||||||    
T  32720839 ttgtctgaattataacatccaaaaatgaaa 32720868  T

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Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 14843876 - 14843772
Alignment:
Q  11 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccaatacctacccttctcgaaacccgctccgcaaaccaactcccctcatcttcacc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14843876 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 14843777  T
Q  111 catcc 115  Q
    |||||    
T  14843776 catcc 14843772  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 14686743 - 14686711
Alignment:
Q  15 atcaccaagccacctgtcataccaaaagtaagt 47  Q
    |||||||||||||||||||||||||||||||||    
T  14686743 atcaccaagccacctgtcataccaaaagtaagt 14686711  T

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Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 3544840 - 3544736
Alignment:
Q  11 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccaatacctacccttctcgaaacccgctccgcaaaccaactcccctcatcttcacc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3544840 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 3544741  T
Q  111 catcc 115  Q
    |||||    
T  3544740 catcc 3544736  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 1248324 - 1248223
Alignment:
Q  11 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccaatacctacccttctcgaaacccgctccgcaaaccaactcccctcatcttcacc 110  Q
    ||||||||||||||||||||||||||||||||||||||| || |||| | ||||||||  |||| |||| |||| |||||||||||||| || |||||||    
T  1248324 ggacatcaccaagccacctgtcataccaaaagtaagtagccaagccattccctaccctcttcgacaccctctcctcaaaccaactccccgcagcttcacc 1248225  T
Q  111 ca 112  Q
    ||    
T  1248224 ca 1248223  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 13867570 - 13867535
Alignment:
Q  13 acatcaccaagccacctgtcataccaaaagtaagta 48  Q
    ||||||||||||||||||||||||||||||||||||    
T  13867570 acatcaccaagccacctgtcataccaaaagtaagta 13867535  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 45795609 - 45795644
Alignment:
Q  13 acatcaccaagccacctgtcataccaaaagtaagta 48  Q
    |||||||| |||||||||||||||||||||||||||    
T  45795609 acatcacctagccacctgtcataccaaaagtaagta 45795644  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 5808984 - 5809013
Alignment:
Q  13 acatcaccaagccacctgtcataccaaaag 42  Q
    ||||||||||||||||||||||||||||||    
T  5808984 acatcaccaagccacctgtcataccaaaag 5809013  T

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Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 476614 - 476718
Alignment:
Q  11 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccaatacctacccttctcgaaacccgctccgcaaaccaactcccctcatcttcacc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  476614 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcagcgtcacc 476713  T
Q  111 catcc 115  Q
    |||||    
T  476714 catcc 476718  T

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Target: scaffold0043 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 34348 - 34244
Alignment:
Q  11 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccaatacctacccttctcgaaacccgctccgcaaaccaactcccctcatcttcacc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  34348 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccattacctattcttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 34249  T
Q  111 catcc 115  Q
    |||||    
T  34248 catcc 34244  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 31675332 - 31675436
Alignment:
Q  11 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccaatacctacccttctcgaaacccgctccgcaaaccaactcccctcatcttcacc 110  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| | ||||||||||||||| |||||||||||||||||||| ||||    
T  31675332 ggacatcaccaagccacctatcataccaaaagtaagtagacgcgccattacctaccttcctcgaaacccgctcctcaaaccaactcccctcatctacacc 31675431  T
Q  111 catcc 115  Q
    |||||    
T  31675432 catcc 31675436  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 31921090 - 31920986
Alignment:
Q  11 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccaatacctacccttctcgaaacccgctccgcaaaccaactcccctcatcttcacc 110  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| | |||||||||| |||| |||||||||||||||||||| ||||    
T  31921090 ggacatcaccaagccacctatcataccaaaagtaagtagacgcgccattacctaccttcctcgaaacccactcctcaaaccaactcccctcatctacacc 31920991  T
Q  111 catcc 115  Q
    |||||    
T  31920990 catcc 31920986  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 34829820 - 34829857
Alignment:
Q  11 ggacatcaccaagccacctgtcataccaaaagtaagta 48  Q
    |||||||||||||||||||||||||||||||| |||||    
T  34829820 ggacatcaccaagccacctgtcataccaaaagaaagta 34829857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 43516485 - 43516450
Alignment:
Q  13 acatcaccaagccacctgtcataccaaaagtaagta 48  Q
    ||||||||||||||| ||||||||||||||||||||    
T  43516485 acatcaccaagccacttgtcataccaaaagtaagta 43516450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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