View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8621_low_13 (Length: 330)
Name: NF8621_low_13
Description: NF8621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8621_low_13 |
 | |
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| [»] scaffold0002 (2 HSPs) |
| | |
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| [»] scaffold0315 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 16898720 - 16898412
Alignment:
| Q |
1 |
tttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttgatggtcagaggcaaattgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16898720 |
tttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttgatggtcagaggcaaattgaa |
16898621 |
T |
|
| Q |
101 |
agctaagcagtggtaattctaaagattccccccgggaaaaatagaaatgtctcctacgttacctgtactatgtgtaagtagcaacgtaatttcatagagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16898620 |
agctaagcagtggtaattctaaagattccccccgggaaaaatagaaatgtctcctacgttacctgtactatgtgtaagtagcaacgtaatttcatagagt |
16898521 |
T |
|
| Q |
201 |
cattcggtctgaatgctacatgaagaacataagccagatgaaggaacagaaagacctaggatgtagaatatcataacatgactgatttggcagatttaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16898520 |
cattcggtctgaatgctacatgaagaacataagccagatgaaggaacagaaagacctaggatgtagaatatcataacatgactgatttggcagatttaga |
16898421 |
T |
|
| Q |
301 |
ttcctatat |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
16898420 |
ttcctatat |
16898412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 18347235 - 18346927
Alignment:
| Q |
1 |
tttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttgatggtcagaggcaaattgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347235 |
tttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttgatggtcagaggcaaattgaa |
18347136 |
T |
|
| Q |
101 |
agctaagcagtggtaattctaaagattccccccgggaaaaatagaaatgtctcctacgttacctgtactatgtgtaagtagcaacgtaatttcatagagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347135 |
agctaagcagtggtaattctaaagattccccccgggaaaaatagaaatgtctcctacgttacctgtactatgtgtaagtagcaacgtaatttcatagagt |
18347036 |
T |
|
| Q |
201 |
cattcggtctgaatgctacatgaagaacataagccagatgaaggaacagaaagacctaggatgtagaatatcataacatgactgatttggcagatttaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347035 |
cattcggtctgaatgctacatgaagaacataagccagatgaaggaacagaaagacctaggatgtagaatatcataacatgactgatttggcagatttaga |
18346936 |
T |
|
| Q |
301 |
ttcctatat |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
18346935 |
ttcctatat |
18346927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 13237256 - 13237564
Alignment:
| Q |
1 |
tttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttgatggtcagaggcaaattgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13237256 |
tttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttgatggtcagaggcaaattgaa |
13237355 |
T |
|
| Q |
101 |
agctaagcagtggtaattctaaagattccccccgggaaaaatagaaatgtctcctacgttacctgtactatgtgtaagtagcaacgtaatttcatagagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13237356 |
agctaagcagtggtaattctaaagattccccccgggaaaaatagaaatgtctcctacgttacctgtactatgtgtaagtagcaacgtaatttcatagagt |
13237455 |
T |
|
| Q |
201 |
cattcggtctgaatgctacatgaagaacataagccagatgaaggaacagaaagacctaggatgtagaatatcataacatgactgatttggcagatttaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13237456 |
cattcggtctgaatgctacatgaagaacataagccagatgaaggaacagaaagacctaggatgtagaatatcataacatgactgatttggcagatttaga |
13237555 |
T |
|
| Q |
301 |
ttcctatat |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
13237556 |
ttcctatat |
13237564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 222 - 309
Target Start/End: Complemental strand, 13749445 - 13749358
Alignment:
| Q |
222 |
gaagaacataagccagatgaaggaacagaaagacctaggatgtagaatatcataacatgactgatttggcagatttagattcctatat |
309 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13749445 |
gaagtacataagccagatgaaggaacagaaagacctaggatgtagaatatcataacatgactgatttggcagatttagattcctatat |
13749358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41641766 - 41641818
Alignment:
| Q |
1 |
tttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaaggggga |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41641766 |
tttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaaggggga |
41641818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 47568097 - 47568043
Alignment:
| Q |
64 |
tattcacatttcatttgatggtcagaggcaaattgaaagctaagcagtggtaatt |
118 |
Q |
| |
|
|||||||||||||||||||||| | | |||||| ||||||||||| |||||||| |
|
|
| T |
47568097 |
tattcacatttcatttgatggtttgggacaaattaaaagctaagcaatggtaatt |
47568043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 198774 - 199073
Alignment:
| Q |
1 |
tttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttgatggtcagaggcaaattgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198774 |
tttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttgatggtcagaggcaaattgaa |
198873 |
T |
|
| Q |
101 |
agctaagcagtggtaattctaaagattccccccgggaaaaatagaaatgtctcctacgttacctgtactatgtgtaagtagcaacgtaatttcatagagt |
200 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||| ||||||| ||||||||||||||||| || |||||| ||||| | ||||||||||||||||| |
|
|
| T |
198874 |
agctaagcagtggtaatt---aaga--cccccgggggaaaatagggatgtctcctacgttacccataatatgtggaagtatcgacgtaatttcatagagt |
198968 |
T |
|
| Q |
201 |
cattcggtctgaatgctacatgaagaacataagccagatgaaggaacagaaagacctaggatgtagaatatcataacatgactgatttggcagatttaga |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||||||| |||| ||||||||| || |
|
|
| T |
198969 |
cattcgttctgaatgctacatgaagaacataagccagatgacggaacgcagagacctaggatgtagaagatcataacatgagcgattcggcagatttgga |
199068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 58 - 305
Target Start/End: Complemental strand, 282192 - 281950
Alignment:
| Q |
58 |
acgggttattcacatttcatttgatggtcagaggcaaattgaaagctaagcagtggtaattctaaagattccccccgggaaaaatagaaatgtctcctac |
157 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||||| ||||||||||| |
|
|
| T |
282192 |
acgggttattcacatttaatttgatggtcagaggcaaattgaaagctaagcagtggtaatt---aaga--cccccgggggaaaatagggatgtctcctac |
282098 |
T |
|
| Q |
158 |
gttacctgtactatgtgtaagtagcaacgtaatttcatagagtcattcggtctgaatgctacatgaagaacataagccagatgaaggaacagaaagacct |
257 |
Q |
| |
|
|||||| || |||||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
282097 |
gttacccataatatgtggaagtatcgacgtaatttcatagagtcattcgatctgaatgctacatgaagaacataagccagatgacggaacgcagagacct |
281998 |
T |
|
| Q |
258 |
aggatgtagaatatcataacatgactgatttggcagatttagattcct |
305 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
281997 |
aggatgtagaagatcataacatgagcgattcggcagatttggattcct |
281950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 42601466 - 42601584
Alignment:
| Q |
59 |
cgggttattcacatttcatttgatggtcagaggcaaattgaaagctaagcagtggtaattctaaagattccccccgggaaaaatagaaatgtctcctacg |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
42601466 |
cgggttattcacatttcatttgatggtcagaggcaaattgaaagctaagcagtggtaattctaaagattcccccgggaaaaaatagaaatgtctcctacg |
42601565 |
T |
|
| Q |
159 |
ttacctgtactatgtgtaa |
177 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
42601566 |
ttacctatactatgtgtaa |
42601584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 15722134 - 15722166
Alignment:
| Q |
226 |
aacataagccagatgaaggaacagaaagaccta |
258 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
15722134 |
aacataagccagatgaaggaacataaagaccta |
15722166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 8385655 - 8385724
Alignment:
| Q |
23 |
aagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttgatggtcagaggc |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8385655 |
aagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttgatggtcagaggc |
8385724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0315 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0315
Description:
Target: scaffold0315; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 10025 - 10073
Alignment:
| Q |
261 |
atgtagaatatcataacatgactgatttggcagatttagattcctatat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10025 |
atgtagaatatcataacatgactgatttggcagatttagattcctatat |
10073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 309
Target Start/End: Complemental strand, 21893321 - 21893290
Alignment:
| Q |
278 |
atgactgatttggcagatttagattcctatat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
21893321 |
atgactgatttggcagatttagattcctatat |
21893290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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