View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8621_low_17 (Length: 247)
Name: NF8621_low_17
Description: NF8621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8621_low_17 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 34499667 - 34499901
Alignment:
| Q |
13 |
tggacatcatttgctttgcgagaccaaatccaaagagatggctgagacatcttctgtgcgtgatacggaggtctggagcagaatctggaaattcaacggc |
112 |
Q |
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| T |
34499667 |
tggacatcatttgctttgcgagaccaaatccaaagagatggctgagacatctactgtgcgtgatacggaggtctggagcagaatctagaaattcaacggc |
34499766 |
T |
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| Q |
113 |
cctagaagcgcgcaaaacttcctttggaggctaggaagcaatattcttcctaccagatgtaatctcagtaaaaaaggtatttctctggacactacttgcc |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34499767 |
cctagaagcgcgcaaaacttcctttggaggctagcaagcaatattcttcctaccagatgtaatctcagtaaaaaaggtatttctctggacactacttgcc |
34499866 |
T |
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| Q |
213 |
ccctctgtaattctggtgttgaagataggaaccat |
247 |
Q |
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| T |
34499867 |
ccctctgtaattctggtgttgaagataggaaccat |
34499901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 8367925 - 8367821
Alignment:
| Q |
98 |
tggaaattcaacggccctagaagcgcgcaaaacttcctttggaggctaggaagcaatattcttcctaccagatgtaatctcagtaaaaaaggtatttctc |
197 |
Q |
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||||| ||||| || || || ||||| ||||| ||||||||| |||| | ||||| ||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
8367925 |
tggaatttcaatggtcccaggagcgcccaaaatttcctttggcggcttgctagcaacattctccctaccagatgtaatctcagtaaaaaaggtatatctc |
8367826 |
T |
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| Q |
198 |
tggac |
202 |
Q |
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| T |
8367825 |
tggac |
8367821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 199419 - 199315
Alignment:
| Q |
98 |
tggaaattcaacggccctagaagcgcgcaaaacttcctttggaggctaggaagcaatattcttcctaccagatgtaatctcagtaaaaaaggtatttctc |
197 |
Q |
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||||| ||||| || || || |||| |||||| ||||||||| |||| | ||||| | ||| |||||||||||||||||||| ||||| ||||| ||| |
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| T |
199419 |
tggaatttcaatggtcccaggagcgtgcaaaatttcctttggcggcttgctagcaacagtctccctaccagatgtaatctcagcaaaaatggtataactc |
199320 |
T |
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| Q |
198 |
tggac |
202 |
Q |
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||||| |
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| T |
199319 |
tggac |
199315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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