View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8621_low_19 (Length: 241)
Name: NF8621_low_19
Description: NF8621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8621_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 43011300 - 43011512
Alignment:
| Q |
18 |
tatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaattggatgtacatgcattgattgggttgagnnnnnnntgcgt |
117 |
Q |
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| T |
43011300 |
tatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaattggatgtacttgcatcgattgggttgagaaaaaaatgcgt |
43011399 |
T |
|
| Q |
118 |
ttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43011400 |
ttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgc |
43011499 |
T |
|
| Q |
218 |
attgtgatgtcca |
230 |
Q |
| |
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||||||||||||| |
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| T |
43011500 |
attgtgatgtcca |
43011512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 43013597 - 43013809
Alignment:
| Q |
18 |
tatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaattggatgtacatgcattgattgggttgagnnnnnnntgcgt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |
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| T |
43013597 |
tatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaattggatgtacttgcatcgattgggttgagaaaaaaatgcgt |
43013696 |
T |
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| Q |
118 |
ttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43013697 |
ttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgc |
43013796 |
T |
|
| Q |
218 |
attgtgatgtcca |
230 |
Q |
| |
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||||||||||||| |
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| T |
43013797 |
attgtgatgtcca |
43013809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 25203191 - 25202979
Alignment:
| Q |
18 |
tatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaattggatgtacatgcattgattgggttgagnnnnnnntgcgt |
117 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| || || |
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| T |
25203191 |
tatgctttttgagtagggcggttatgatctagtattggggatggcatgactgacacaaattggatgtacttgcatcgattgggttgagaaaaaaatgtgt |
25203092 |
T |
|
| Q |
118 |
ttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgc |
217 |
Q |
| |
|
||||||||||| || |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25203091 |
ttcgactatcagggtgaatggattgagatcataggtattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggttagttgc |
25202992 |
T |
|
| Q |
218 |
attgtgatgtcca |
230 |
Q |
| |
|
||||||||||||| |
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|
| T |
25202991 |
attgtgatgtcca |
25202979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 35075408 - 35075480
Alignment:
| Q |
158 |
gtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgcattgtgatgtcca |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35075408 |
gtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggtcagttgcattgtgatgtcca |
35075480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 35075346 - 35075411
Alignment:
| Q |
21 |
gctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaattggatgtac |
86 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35075346 |
gctttttgagttgggcggttatgatctagtattggggatggcatggctgacacaaattggatgtac |
35075411 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 25676068 - 25675856
Alignment:
| Q |
18 |
tatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaattggatgtacatgcattgattgggttgagnnnnnnntgcgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |
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| T |
25676068 |
tatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaattggatgtacttgcatcgattgggttgagaaaaaaatgcgt |
25675969 |
T |
|
| Q |
118 |
ttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25675968 |
ttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggccagttgc |
25675869 |
T |
|
| Q |
218 |
attgtgatgtcca |
230 |
Q |
| |
|
||||||||||||| |
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|
| T |
25675868 |
attgtgatgtcca |
25675856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 15090380 - 15090163
Alignment:
| Q |
18 |
tatgctttttgagttgcgcggttatgatctagtattggggatggcatggctgacacaaattggatgtacatgcattgattgggttgagnnnnnnnt---- |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
15090380 |
tatgctttttgagttgggcggttatgatctagtattggggatggcatggctgacacaaattggatgtacttgcatcgattgggttgagaaaaaaaaaaaa |
15090281 |
T |
|
| Q |
114 |
---gcgtttcgactatcaaggcgaatggatagagatcagaggaattcgtactagagagtgcactccattacaaaactatgttgatgaaaatcattttggc |
210 |
Q |
| |
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| ||||||||||||| || |||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15090280 |
aaagtgtttcgactatcagggtgaatggattgagatcagaggaattcgtactagag--tgcaatccattacaaaactatgttgatgaaaatcattttggc |
15090183 |
T |
|
| Q |
211 |
cagttgcattgtgatgtcca |
230 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
15090182 |
cagttgcattgtgatgtcca |
15090163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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