View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8621_low_23 (Length: 204)
Name: NF8621_low_23
Description: NF8621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8621_low_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 36845140 - 36845341
Alignment:
| Q |
1 |
tttggacataaaatcaatttttaaaacaaacttatattacaacttaatgtgatgtgttctggtgttttactttccagtttttaaaccacactgctgatca |
100 |
Q |
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| T |
36845140 |
tttggacataaaatcaatttttaaaacaaacttatattacaacttaatgtgatgtgttctggtgttttactttccagtttttaaatcacactgctgatca |
36845239 |
T |
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| Q |
101 |
taagttttaactctttccaattcaaataccatttgaagtaatgtctataattttgacgtgaaaatggttaaaattacataacagagaaggctcaagcaag |
200 |
Q |
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| T |
36845240 |
taagttttaactc--tccaattcaaatatcatttgaagtaatgtctataattttgacgtgaaaatggttaaaattacataacagagaaggctcaagcaag |
36845337 |
T |
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| Q |
201 |
tgtt |
204 |
Q |
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|||| |
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| T |
36845338 |
tgtt |
36845341 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 10561903 - 10561864
Alignment:
| Q |
100 |
ataagttttaactctttccaattcaaataccatttgaagt |
139 |
Q |
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| T |
10561903 |
ataagttttaattctttccaattcaaataccatttgaagt |
10561864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 791707 - 791792
Alignment:
| Q |
55 |
tgttctggtgttttactttccagtttttaaaccacactgctgatcataagttt--taactctttccaattcaaataccatttgaag |
138 |
Q |
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| T |
791707 |
tgttatggtgctttactttccagtttttaaaccatgttgctgatagtaagttttatagctctttccggttcaaataccctttgaag |
791792 |
T |
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