View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8621_low_4 (Length: 524)
Name: NF8621_low_4
Description: NF8621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8621_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 39779454 - 39779971
Alignment:
| Q |
1 |
tttaattgtgatcttggttccaagttctcaaactacctttaatctttttgagtttttcctttagtacaaattctccccaaccatccacgtatgagagtgc |
100 |
Q |
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| T |
39779454 |
tttaattgtgatcttggttccaagttctcaaactacctttaatctttttgagtttttcctttagtacaaattctccccaaccatccacgtatgagagtgc |
39779553 |
T |
|
| Q |
101 |
cattgtttttgaacaaatttcttataacctagaagatccgcccaatatttccacatacattgaggactaggacctcaattctcctcatcgatggtaatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
39779554 |
cattgtttttgaacaaatttcttataacctagaagatccgcccaatatttcaacatacattgaggacgacgacctcaattctcctcatcgatggtaatga |
39779653 |
T |
|
| Q |
201 |
gactgggcaatggtcagataggcctctgatcaaagcattcattacttttattcatctctatctatcatctttagattacttagaactcaagaaataaaac |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39779654 |
gactgggcaatggtcagatagtcctctgatcaaagcattcattacttttattcatctctatcgatcatctttagattacttagaactcaagaaataaaac |
39779753 |
T |
|
| Q |
301 |
aagttgcgctagcatgttcacttatagattaattactctgttctctcaaaggaatggtaaatttgagatttaccatgcattcaaaagaaaattgtgaatg |
400 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39779754 |
aagttgcgctaacatgttcacttatagattaattactctgttctctcaaaggaatggtaaatttgagatttaccatgcattcaaaagaaaattgtgaatg |
39779853 |
T |
|
| Q |
401 |
tccttctcagtttgaaacaccgtctaaatcacgtctttcaacnnnnnnnnattaacttttaaaagagagattgtgaatgtccttctcaatattttttctg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39779854 |
tccttctcagtttgaaacaccgtctaaatcacgtctttcaacttttttttattagcttttaaaaga-agattgtgaatgtccttctcaatattttttctg |
39779952 |
T |
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| Q |
501 |
ttggtg-atgtccatctca |
518 |
Q |
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| T |
39779953 |
tttgtgaatgtccatctca |
39779971 |
T |
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