View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8622_high_13 (Length: 311)
Name: NF8622_high_13
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 3542704 - 3542411
Alignment:
| Q |
19 |
tgtttgtgttgtgttggaagataatgaatgaattgattggtttttaagaagaaaaggttgtgtt----------tccttgtgataggatagaatcatatg |
108 |
Q |
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| T |
3542704 |
tgtttgtgttgtgttggaagataatgaatgaattgattggtttttaagaagaaaaggttgtgttgtgttgtgtttccttgtgataggataggatcatatg |
3542605 |
T |
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| Q |
109 |
atataaagtatttgatatttaatgatgattattattataggagggnnnnnnnntc-ataggttgaccaagttgataagnnnnnnncgagtatcgaaaata |
207 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |
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| T |
3542604 |
atataaagtatatgatatttaatgatgattattattataggaggaaaaaaaagaagataggttgaccaagttgataagaaaaaaacgagtgtcgaaaata |
3542505 |
T |
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| Q |
208 |
ctttgacgagttatccgtaaatattatcggtagacggtagtttaattggtgttcattgaatatttatcattgttctaattttgacgagtctctg |
301 |
Q |
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||||||||||||| |||||||||||| ||||||||||| || | || ||||| ||||||||||||| |||||||||||||||| ||||||||| |
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| T |
3542504 |
ctttgacgagttaatcgtaaatattattggtagacggtaattcagttagtgttaattgaatatttatgattgttctaattttgatgagtctctg |
3542411 |
T |
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