View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8622_high_14 (Length: 307)
Name: NF8622_high_14
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 37306479 - 37306760
Alignment:
| Q |
10 |
acatcatattccacaacagcatttccagtggcaaaactcacagagtaaaacttggcttgagcataaccacgtacaaatctgaaagccccagttccaccaa |
109 |
Q |
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| T |
37306479 |
acatcatattccacaacagcatttccagtggcaaaactcacagagtaaaacttggcttgagcataaccacgaacaaatctgaaagccccagttccaccaa |
37306578 |
T |
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| Q |
110 |
caataggcatttctctaataggttcactcacgatcatgttcctagccaatatactaagtgtgcttccattaaattctccctctgagaacgcccaagtcat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37306579 |
caataggcatttctctaataggttcactcacgatcatgttcctagccaatatactaagtgtgcttccattaaattctccctctgagaacgcccaagtcat |
37306678 |
T |
|
| Q |
210 |
aaccatcattagtcccatctcatcttgtgatattacagcgtaaattccttgagctttacccacgagtttcgagtcaagttca |
291 |
Q |
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| T |
37306679 |
aaccatcattagtcccatctcatcttgtgatattacagcgtaaattccttgagctttacccacgagtttcgagtcaagttca |
37306760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 55 - 291
Target Start/End: Original strand, 37316869 - 37317105
Alignment:
| Q |
55 |
taaaacttggcttgagcataaccacgtacaaatctgaaagccccagttccaccaacaataggcatttctctaataggttcactcacgatcatgttcctag |
154 |
Q |
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| T |
37316869 |
taaaatttagcttgagcatacccacgtacaaaacgaaaagccccagttccaccaacaatggccatttctctaacaggttcactcatgatcatatttctac |
37316968 |
T |
|
| Q |
155 |
ccaatatactaagtgtgcttccattaaattctccctctgagaacgcccaagtcataaccatcattagtcccatctcatcttgtgatattacagcgtaaat |
254 |
Q |
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| T |
37316969 |
ccaatatgctaagtgtgcttccattgaaatctccatcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatattgaagtgtaaat |
37317068 |
T |
|
| Q |
255 |
tccttgagctttacccacgagtttcgagtcaagttca |
291 |
Q |
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| T |
37317069 |
tccttgagccttacccacaagtttcgagtcacgttca |
37317105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 55 - 290
Target Start/End: Original strand, 37324429 - 37324664
Alignment:
| Q |
55 |
taaaacttggcttgagcataaccacgtacaaatctgaaagccccagttccaccaacaataggcatttctctaataggttcactcacgatcatgttcctag |
154 |
Q |
| |
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|||||||| || |||||||| |||||||| || | || ||||| ||||||||||| || | ||||||||||| ||||||||||| ||||||||| ||| |
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| T |
37324429 |
taaaacttagcctgagcatatccacgtacgaaacgaaatgccccggttccaccaactatggccatttctctaacaggttcactcatgatcatgtttctac |
37324528 |
T |
|
| Q |
155 |
ccaatatactaagtgtgcttccattaaattctccctctgagaacgcccaagtcataaccatcattagtcccatctcatcttgtgatattacagcgtaaat |
254 |
Q |
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| T |
37324529 |
ccaatatgctaagtgtgcttccattaaaatgtccatcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaagtgtaaat |
37324628 |
T |
|
| Q |
255 |
tccttgagctttacccacgagtttcgagtcaagttc |
290 |
Q |
| |
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||||||||| |||||||| |||||||||||| |||| |
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| T |
37324629 |
tccttgagccttacccacaagtttcgagtcacgttc |
37324664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 55 - 278
Target Start/End: Original strand, 37320448 - 37320671
Alignment:
| Q |
55 |
taaaacttggcttgagcataaccacgtacaaatctgaaagccccagttccaccaacaataggcatttctctaataggttcactcacgatcatgttcctag |
154 |
Q |
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||||| || ||||||||||||||||||||||| | ||||||||||||||||||||||| | ||||||||||| ||||||||||| |||||| || ||| |
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| T |
37320448 |
taaaatttagcttgagcataaccacgtacaaaacgaaaagccccagttccaccaacaatggccatttctctaacaggttcactcatgatcatatttctac |
37320547 |
T |
|
| Q |
155 |
ccaatatactaagtgtgcttccattaaattctccctctgagaacgcccaagtcataaccatcattagtcccatctcatcttgtgatattacagcgtaaat |
254 |
Q |
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||||||| ||||||||||||||||| || | ||| || | ||| | | ||||| |||||||||||||||||||| ||||||||||| | |||||| |
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| T |
37320548 |
ccaatatgctaagtgtgcttccattgaaatgtccatcagtgaatgtcatggtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaat |
37320647 |
T |
|
| Q |
255 |
tccttgagctttacccacgagttt |
278 |
Q |
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||||||||| |||||||| ||||| |
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| T |
37320648 |
tccttgagccttacccacaagttt |
37320671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 24669194 - 24669252
Alignment:
| Q |
69 |
agcataaccacgtacaaatctgaaagccccagttccaccaacaataggcatttctctaa |
127 |
Q |
| |
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||||||||| | | ||||||| ||||| |||||||| |||||||||||||||||||||| |
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| T |
24669194 |
agcataaccccttgcaaatctaaaagcaccagttcctccaacaataggcatttctctaa |
24669252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 13702930 - 13702973
Alignment:
| Q |
83 |
caaatctgaaagccccagttccaccaacaataggcatttctcta |
126 |
Q |
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||||||| ||| | |||||||||||||||||||||||||||||| |
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| T |
13702930 |
caaatctaaaaacaccagttccaccaacaataggcatttctcta |
13702973 |
T |
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