View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8622_high_4 (Length: 463)

Name: NF8622_high_4
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8622_high_4
NF8622_high_4
[»] chr3 (54 HSPs)
chr3 (275-446)||(52198385-52198559)
chr3 (51-216)||(2547153-2547318)
chr3 (46-216)||(15538949-15539119)
chr3 (217-417)||(16185434-16185656)
chr3 (279-419)||(35411761-35411901)
chr3 (278-417)||(18645519-18645658)
chr3 (278-419)||(6921973-6922114)
chr3 (278-419)||(23299329-23299470)
chr3 (278-417)||(538098-538237)
chr3 (51-202)||(19632009-19632160)
chr3 (50-202)||(40354386-40354538)
chr3 (46-202)||(19659902-19660058)
chr3 (282-417)||(10884105-10884240)
chr3 (46-216)||(10725874-10726043)
chr3 (51-216)||(13440032-13440197)
chr3 (55-202)||(5347306-5347453)
chr3 (310-419)||(6445437-6445547)
chr3 (57-169)||(19614326-19614438)
chr3 (332-419)||(55032713-55032800)
chr3 (310-419)||(28265115-28265225)
chr3 (46-182)||(10934382-10934518)
chr3 (328-419)||(53815105-53815196)
chr3 (54-185)||(12252872-12253002)
chr3 (340-419)||(17532493-17532572)
chr3 (54-185)||(30098767-30098897)
chr3 (46-216)||(16218952-16219112)
chr3 (316-415)||(54736631-54736730)
chr3 (216-280)||(35411675-35411740)
chr3 (307-362)||(9380143-9380198)
chr3 (278-417)||(10107405-10107531)
chr3 (310-415)||(54460491-54460596)
chr3 (224-281)||(19302300-19302357)
chr3 (217-282)||(34984693-34984758)
chr3 (229-281)||(31548563-31548615)
chr3 (217-281)||(53814971-53815035)
chr3 (279-323)||(55032789-55032833)
chr3 (218-281)||(9380012-9380075)
chr3 (239-282)||(10880798-10880841)
chr3 (239-282)||(16243188-16243231)
chr3 (76-182)||(27052373-27052479)
chr3 (239-282)||(43808900-43808943)
chr3 (217-280)||(54460367-54460430)
chr3 (364-415)||(9392057-9392108)
chr3 (230-281)||(19305483-19305534)
chr3 (275-373)||(22994414-22994513)
chr3 (361-415)||(8462338-8462392)
chr3 (52-178)||(14305477-14305603)
chr3 (217-282)||(29344707-29344773)
chr3 (216-282)||(41976320-41976386)
chr3 (239-281)||(54736786-54736828)
chr3 (217-281)||(3839790-3839857)
chr3 (217-281)||(10884018-10884082)
chr3 (217-281)||(20729412-20729477)
chr3 (217-281)||(23299489-23299553)
[»] chr4 (51 HSPs)
chr4 (275-417)||(18910684-18910826)
chr4 (278-419)||(15431247-15431388)
chr4 (278-419)||(15437861-15438002)
chr4 (278-419)||(33410738-33410879)
chr4 (275-419)||(3798572-3798716)
chr4 (275-419)||(40617588-40617732)
chr4 (278-417)||(5721749-5721888)
chr4 (275-419)||(19861063-19861207)
chr4 (278-417)||(9717034-9717173)
chr4 (46-216)||(17959772-17959942)
chr4 (275-419)||(19865419-19865563)
chr4 (275-425)||(49269815-49269964)
chr4 (278-415)||(5669711-5669848)
chr4 (275-419)||(5680549-5680693)
chr4 (275-419)||(12237434-12237578)
chr4 (50-216)||(11776131-11776296)
chr4 (51-216)||(15711326-15711491)
chr4 (275-416)||(53093801-53093941)
chr4 (56-202)||(16571115-16571262)
chr4 (46-185)||(9566478-9566616)
chr4 (46-216)||(21981859-21982029)
chr4 (54-185)||(12334735-12334865)
chr4 (332-417)||(37104039-37104124)
chr4 (225-281)||(14571034-14571090)
chr4 (361-419)||(27013396-27013454)
chr4 (216-273)||(5680468-5680525)
chr4 (52-170)||(19605863-19605981)
chr4 (278-323)||(37104113-37104158)
chr4 (239-281)||(40794214-40794256)
chr4 (239-282)||(53010393-53010436)
chr4 (239-281)||(3718358-3718400)
chr4 (275-313)||(14571106-14571144)
chr4 (239-281)||(21419001-21419043)
chr4 (239-281)||(29324001-29324043)
chr4 (239-281)||(34320780-34320822)
chr4 (239-281)||(44809840-44809882)
chr4 (217-282)||(24044992-24045057)
chr4 (217-281)||(12782106-12782170)
chr4 (217-281)||(52007367-52007431)
chr4 (216-282)||(44164000-44164067)
chr4 (217-282)||(19819950-19820016)
chr4 (217-271)||(49269735-49269789)
chr4 (217-281)||(15430701-15430766)
chr4 (217-281)||(15437315-15437380)
chr4 (217-281)||(27013229-27013294)
chr4 (239-282)||(27677900-27677944)
chr4 (54-109)||(12344244-12344298)
chr4 (247-282)||(35509229-35509264)
chr4 (217-282)||(19826701-19826767)
chr4 (239-282)||(27691959-27692003)
chr4 (418-446)||(49270024-49270052)
[»] scaffold0080 (1 HSPs)
scaffold0080 (224-417)||(26260-26467)
[»] chr7 (32 HSPs)
chr7 (275-417)||(26556590-26556732)
chr7 (217-417)||(8276012-8276234)
chr7 (278-417)||(10431469-10431608)
chr7 (46-182)||(11774110-11774246)
chr7 (51-216)||(29731025-29731192)
chr7 (51-216)||(29741755-29741922)
chr7 (278-419)||(4542157-4542297)
chr7 (278-417)||(2442056-2442194)
chr7 (50-169)||(23099798-23099916)
chr7 (46-202)||(16094641-16094797)
chr7 (50-202)||(16196550-16196702)
chr7 (50-201)||(20148524-20148675)
chr7 (328-419)||(45287913-45288004)
chr7 (328-419)||(45291249-45291340)
chr7 (83-179)||(16175156-16175252)
chr7 (68-169)||(17161329-17161426)
chr7 (215-281)||(45291410-45291476)
chr7 (46-202)||(8327247-8327392)
chr7 (217-282)||(9865577-9865642)
chr7 (217-281)||(45288074-45288138)
chr7 (46-202)||(8324062-8324207)
chr7 (217-281)||(9273970-9274034)
chr7 (217-281)||(20081576-20081640)
chr7 (142-186)||(29741238-29741282)
chr7 (239-282)||(4694745-4694788)
chr7 (239-281)||(17729995-17730037)
chr7 (51-100)||(13765448-13765496)
chr7 (239-282)||(4596859-4596902)
chr7 (239-281)||(9080398-9080440)
chr7 (239-281)||(10344638-10344680)
chr7 (130-183)||(13765379-13765432)
chr7 (50-87)||(23386721-23386758)
[»] chr5 (38 HSPs)
chr5 (275-446)||(31862952-31863126)
chr5 (223-419)||(37214772-37214990)
chr5 (217-419)||(22937831-22938055)
chr5 (217-417)||(32837083-32837305)
chr5 (278-417)||(42061569-42061708)
chr5 (17-179)||(17169480-17169642)
chr5 (217-417)||(43490793-43491015)
chr5 (278-415)||(28441961-28442098)
chr5 (307-435)||(21336481-21336609)
chr5 (307-446)||(21827766-21827908)
chr5 (46-169)||(17364075-17364198)
chr5 (45-216)||(26727628-26727797)
chr5 (50-216)||(19316496-19316662)
chr5 (51-202)||(24194098-24194257)
chr5 (54-185)||(19268359-19268489)
chr5 (61-179)||(26132602-26132719)
chr5 (50-179)||(13456880-13457009)
chr5 (56-187)||(22468498-22468629)
chr5 (310-415)||(39191446-39191551)
chr5 (328-416)||(28788179-28788267)
chr5 (360-435)||(21333465-21333540)
chr5 (332-412)||(14376638-14376717)
chr5 (216-286)||(7270240-7270310)
chr5 (361-415)||(40916667-40916721)
chr5 (236-280)||(2836699-2836743)
chr5 (119-202)||(26867846-26867929)
chr5 (224-281)||(18031717-18031774)
chr5 (239-282)||(30065584-30065627)
chr5 (239-281)||(14016972-14017014)
chr5 (239-281)||(28788337-28788379)
chr5 (239-281)||(39191353-39191395)
chr5 (241-282)||(4100372-4100413)
chr5 (214-281)||(21336677-21336745)
chr5 (50-179)||(23595672-23595803)
chr5 (217-281)||(21827976-21828041)
chr5 (415-446)||(22937738-22937769)
chr5 (239-273)||(17747639-17747673)
chr5 (50-115)||(37279983-37280051)
[»] chr1 (18 HSPs)
chr1 (278-419)||(49499344-49499485)
chr1 (278-417)||(2793382-2793521)
chr1 (278-419)||(1951121-1951262)
chr1 (46-209)||(20407759-20407922)
chr1 (217-417)||(29644086-29644308)
chr1 (289-424)||(34733035-34733169)
chr1 (51-185)||(21423179-21423313)
chr1 (310-417)||(42021837-42021945)
chr1 (70-182)||(22615107-22615209)
chr1 (50-202)||(18621984-18622134)
chr1 (51-216)||(21719584-21719761)
chr1 (217-282)||(2404722-2404787)
chr1 (239-281)||(27537149-27537191)
chr1 (239-281)||(45961643-45961685)
chr1 (217-281)||(41059169-41059234)
chr1 (308-373)||(7634991-7635057)
chr1 (239-281)||(42021743-42021785)
chr1 (217-281)||(21019304-21019367)
[»] chr8 (25 HSPs)
chr8 (278-419)||(25595460-25595602)
chr8 (278-419)||(33878014-33878155)
chr8 (275-419)||(10663091-10663235)
chr8 (275-419)||(45156694-45156838)
chr8 (275-417)||(43682575-43682717)
chr8 (217-419)||(5540771-5540995)
chr8 (278-419)||(25592275-25592417)
chr8 (278-419)||(18722086-18722227)
chr8 (278-417)||(25228097-25228234)
chr8 (275-399)||(14420944-14421068)
chr8 (46-202)||(21695001-21695155)
chr8 (310-419)||(17895293-17895403)
chr8 (322-416)||(20520079-20520173)
chr8 (56-217)||(18830718-18830876)
chr8 (50-202)||(25263182-25263335)
chr8 (217-281)||(5981156-5981220)
chr8 (217-281)||(14420864-14420928)
chr8 (310-415)||(30640624-30640729)
chr8 (212-281)||(45156854-45156923)
chr8 (239-282)||(12582240-12582283)
chr8 (361-419)||(23612745-23612803)
chr8 (239-280)||(18826771-18826812)
chr8 (69-153)||(17622412-17622496)
chr8 (217-281)||(25228016-25228078)
chr8 (239-280)||(19792948-19792990)
[»] chr6 (28 HSPs)
chr6 (217-419)||(9953036-9953260)
chr6 (275-419)||(5738965-5739109)
chr6 (53-181)||(23299570-23299698)
chr6 (278-419)||(23379589-23379731)
chr6 (278-419)||(23388928-23389070)
chr6 (278-417)||(2371496-2371635)
chr6 (278-417)||(34501497-34501636)
chr6 (46-216)||(14354205-14354375)
chr6 (58-216)||(19725427-19725584)
chr6 (53-202)||(12487657-12487806)
chr6 (51-178)||(19977394-19977521)
chr6 (46-216)||(10974805-10974974)
chr6 (50-202)||(12463736-12463888)
chr6 (51-202)||(23294328-23294479)
chr6 (46-216)||(14566610-14566767)
chr6 (217-281)||(28666112-28666176)
chr6 (239-282)||(10289208-10289251)
chr6 (108-182)||(19980203-19980277)
chr6 (46-125)||(19980124-19980203)
chr6 (119-202)||(23350239-23350322)
chr6 (239-281)||(20181295-20181337)
chr6 (239-281)||(22154654-22154696)
chr6 (312-344)||(13004611-13004643)
chr6 (51-110)||(16896605-16896664)
chr6 (52-115)||(22545767-22545830)
chr6 (47-109)||(23349688-23349748)
chr6 (251-281)||(13004434-13004464)
chr6 (275-304)||(13004480-13004509)
[»] chr2 (29 HSPs)
chr2 (275-419)||(25139816-25139960)
chr2 (278-419)||(36809211-36809352)
chr2 (275-419)||(38006062-38006206)
chr2 (278-417)||(26358755-26358894)
chr2 (278-419)||(25873286-25873427)
chr2 (278-419)||(25821693-25821835)
chr2 (278-419)||(25869918-25870059)
chr2 (275-416)||(16788468-16788609)
chr2 (278-415)||(30275472-30275608)
chr2 (46-216)||(21654118-21654278)
chr2 (46-185)||(18995145-18995283)
chr2 (328-419)||(10600096-10600187)
chr2 (46-202)||(28774139-28774284)
chr2 (332-417)||(29439712-29439797)
chr2 (216-277)||(25139980-25140041)
chr2 (239-282)||(43722926-43722969)
chr2 (239-281)||(5665852-5665894)
chr2 (216-281)||(10599950-10600015)
chr2 (278-323)||(15466253-15466298)
chr2 (239-282)||(13972748-13972791)
chr2 (240-282)||(5104974-5105016)
chr2 (239-281)||(31430574-31430616)
chr2 (239-281)||(38014658-38014700)
chr2 (217-282)||(3874482-3874547)
chr2 (278-323)||(29439678-29439723)
chr2 (242-282)||(6825999-6826039)
chr2 (239-282)||(13136784-13136827)
chr2 (417-446)||(25139723-25139752)
chr2 (378-419)||(30925934-30925975)
[»] scaffold0035 (1 HSPs)
scaffold0035 (278-419)||(61680-61821)
[»] scaffold0005 (3 HSPs)
scaffold0005 (278-417)||(291046-291185)
scaffold0005 (225-281)||(246286-246342)
scaffold0005 (275-313)||(246232-246270)
[»] scaffold0190 (1 HSPs)
scaffold0190 (53-216)||(1623-1786)
[»] scaffold0111 (1 HSPs)
scaffold0111 (49-202)||(30300-30453)
[»] scaffold0305 (1 HSPs)
scaffold0305 (54-185)||(2438-2568)
[»] scaffold0228 (3 HSPs)
scaffold0228 (46-181)||(7147-7282)
scaffold0228 (46-181)||(14729-14864)
scaffold0228 (46-181)||(24681-24816)
[»] scaffold0015 (1 HSPs)
scaffold0015 (217-417)||(197242-197453)
[»] scaffold0001 (1 HSPs)
scaffold0001 (46-216)||(154898-155068)
[»] scaffold0417 (1 HSPs)
scaffold0417 (50-179)||(3522-3651)
[»] scaffold0184 (1 HSPs)
scaffold0184 (51-167)||(5313-5428)
[»] scaffold0064 (1 HSPs)
scaffold0064 (54-185)||(10052-10187)
[»] scaffold0412 (1 HSPs)
scaffold0412 (54-219)||(3137-3301)
[»] scaffold0530 (1 HSPs)
scaffold0530 (104-212)||(2942-3050)
[»] scaffold1114 (1 HSPs)
scaffold1114 (51-216)||(1802-1966)
[»] scaffold0007 (3 HSPs)
scaffold0007 (46-149)||(205918-206021)
scaffold0007 (46-149)||(210888-210991)
scaffold0007 (152-216)||(204853-204920)
[»] scaffold0270 (6 HSPs)
scaffold0270 (310-419)||(4195-4305)
scaffold0270 (310-419)||(11325-11435)
scaffold0270 (310-419)||(835-945)
scaffold0270 (241-281)||(4356-4396)
scaffold0270 (241-281)||(11486-11526)
scaffold0270 (241-281)||(996-1036)
[»] scaffold2087 (1 HSPs)
scaffold2087 (46-154)||(94-202)
[»] scaffold0381 (2 HSPs)
scaffold0381 (361-419)||(6329-6387)
scaffold0381 (217-281)||(6489-6554)
[»] scaffold0757 (1 HSPs)
scaffold0757 (217-281)||(4563-4627)
[»] scaffold0093 (1 HSPs)
scaffold0093 (119-202)||(51801-51884)
[»] scaffold0039 (1 HSPs)
scaffold0039 (64-179)||(106039-106154)
[»] scaffold1993 (1 HSPs)
scaffold1993 (216-273)||(1044-1101)
[»] scaffold0520 (1 HSPs)
scaffold0520 (217-282)||(4815-4880)
[»] scaffold0334 (1 HSPs)
scaffold0334 (278-319)||(18546-18588)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 275 - 446
Target Start/End: Original strand, 52198385 - 52198559
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  52198385 aagcaagaaaaatagaagattttgaagaaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattg 52198484  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaagcatatcatagtgg---catatatttttga 446  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| |||| ||||||||   |||||||||||||    
T  52198485 gttaaaatgtgtcacgatggctatttcgtgacacgattttaggaaacataccatagtggcgtcatatatttttga 52198559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 2547318 - 2547153
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaa 150  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  2547318 ttttcattcaaacttcacaaacaaccacaccaattcaaaccccatcaacatacaaacataaacaaatattcatgaagtgaatttaaacatgtttcaacaa 2547219  T
Q  151 caatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||||||||||| |||||| |||||||||||||||||  || |||||||||||||||||||||||||    
T  2547218 caatcactcacaaattcacgatttacactcaaataaacaaaaatcatcaaaatcacttaacaacaa 2547153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 15538949 - 15539119
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| |||||||||||||||||||||||| ||||||||||||||  ||||||||||| ||||||||  ||| |||||| |||||||||||||||||||||    
T  15538949 ctcatttttcattcaaacttcacaaacaatcacaccaattcaaaacccatcaacatacaaacataatcaaacatttataaagtgaatttaaacatgtttc 15539048  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||||| ||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  15539049 aacaataatcactcatcaattcatgatttacactcaaataagcaaaaatcatcaaaatcacttaacaacaa 15539119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 217 - 417
Target Start/End: Complemental strand, 16185656 - 16185434
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaa----------------------gcaagaaaaatagaagat 294  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||| |||||    
T  16185656 tgatgacagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaaacaagcttaagcagcaagaaaagcaagaaaaatataagat 16185557  T
Q  295 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatgg 394  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||| | ||||||||||||||||||    
T  16185556 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacatgtcacgttttagagcacaggatgaggttcactcgacattggctaaaacgtgtcacgatgg 16185457  T
Q  395 ctattttgtgacacgattttagg 417  Q
    |||||| ||||||||||||||||    
T  16185456 ctatttcgtgacacgattttagg 16185434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 279 - 419
Target Start/End: Original strand, 35411761 - 35411901
Alignment:
Q  279 aagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtta 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| |||||||||||||||||||| ||||    
T  35411761 aagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggaacacaggatgaggttcattcgacattggtta 35411860  T
Q  379 aaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||| |||||||||||||||||| ||||||||||||||||||    
T  35411861 aaatgtgtcacgatggctatttcgtgacacgattttaggaa 35411901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 278 - 417
Target Start/End: Complemental strand, 18645658 - 18645519
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||| |||    
T  18645658 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatgaggttcattcgacattggtt 18645559  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||| ||||||||||| ||||||| ||||||||||||||||    
T  18645558 aaatcgtgtcacgatagctatttcgtgacacgattttagg 18645519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 278 - 419
Target Start/End: Original strand, 6921973 - 6922114
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| ||     
T  6921973 caagagaaatataagattttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacatgatgaggttcattcaacattggtg 6922072  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  6922073 aaaacgtgtcacgatggctatttcgtgacacgattttaggaa 6922114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 23299470 - 23299329
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||  ||    
T  23299470 caagagaaatagaagattttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacaatttggagcacaagatgaggttcattcgacattgatt 23299371  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  23299370 aaaacgtgtcacgatggctatttcgtgacacgattttaggaa 23299329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 538098 - 538237
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||| |||||||||||||| |||    
T  538098 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcacagaatgaagttcattcgacattggtt 538197  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||||||||| ||||||| ||||| ||||||||||||||||    
T  538198 aaaacgtgttacgatggttatttcgtgacacgattttagg 538237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 19632160 - 19632009
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaa 150  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||  ||||| ||||||||||||||||||| |||||||||||||    
T  19632160 ttttcattcaaacttcaaaaacaaccacaccaattcaaaccccatcaacatacaaacatgcataaacatttatgaagtgaatttaagcatgtttcaacaa 19632061  T
Q  151 caatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
     ||||||||| ||||||||||||||||||||| |||| || |||||||||||    
T  19632060 taatcactcatcaattcatgatttacactcaattaagcaaaaatcatcaaaa 19632009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 50 - 202
Target Start/End: Complemental strand, 40354538 - 40354386
Alignment:
Q  50 attttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaaca 149  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||    
T  40354538 attttcatttaaacttcacaaacaaccacaccaattcaaaccccatcaacatataaacataaataaacattcaagaagtgaatttaaacatgttccaaca 40354439  T
Q  150 acaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
      ||||||||| ||||||||| |||||||| ||||||| || |||||||||||    
T  40354438 taaatcactcatcaattcatggtttacacttaaataagcaaaaatcatcaaaa 40354386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 46 - 202
Target Start/End: Complemental strand, 19660058 - 19659902
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |||||   ||| | ||||||||||||||||||| ||||||||    
T  19660058 ctcatttttcattcaaacttcataaacatccacaccaattcaaaccccatcaacatacaaacaggtatagacatttatgaagtgaatttaagcatgtttc 19659959  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    ||||| ||||||||| ||||||||||||||||||||| |||| || |||||||||||    
T  19659958 aacaataatcactcatcaattcatgatttacactcaattaagcaaaaatcatcaaaa 19659902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 282 - 417
Target Start/End: Original strand, 10884105 - 10884240
Alignment:
Q  282 aaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaa 381  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||  |||||| ||| ||||||||||||||||  ||||||    
T  10884105 aaaaatagaagatttcgaagaaagcaaaatcgtgtcacgattgttgaaaacctgtcacgatttgaagcacaggattaggttcattcgacattgattaaaa 10884204  T
Q  382 cgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||||||| |||||| |||| ||||||||||||||||    
T  10884205 cgtgtcatgatggccatttcgtgacacgattttagg 10884240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 10725874 - 10726043
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||||||||||| ||||||||| ||  |||||||| ||||||||| | ||||| ||| ||||||||  ||| ||| |||||||||||| |||||||||||    
T  10725874 ctcaattttcatccaaacttcataagtaaccacacaaattcaaacccaatcaatatacaaacataac-aaacattcatgaagtgaattcaaacatgtttc 10725972  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||  ||||||||||||    
T  10725973 aacaacaatcactcaccaattcatgatttacactcaattaataaaaaatcatcaaaacaacttaacaacaa 10726043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 13440032 - 13440197
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaa 150  Q
    ||||||||||||||||| |||||||||||||||||||||   ||| |||||| ||||||||| ||| ||| |||||||||||| ||||||||||||||||    
T  13440032 ttttcattcaaacttcataaacaaccacaccaattcaaatctcataaacatacaaacataaacaaacattcatgaagtgaattcaaacatgtttcaacaa 13440131  T
Q  151 caatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||||||  || || ||||||||| |||||||| ||| ||| |||||||||||  ||| ||||||||    
T  13440132 caatcaaccaacatttcatgattcacactcaattaataaaaaatcatcaaaacaactcaacaacaa 13440197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 5347306 - 5347453
Alignment:
Q  55 cattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaat 154  Q
    |||||||| |||  ||||||||||||||||| ||| |||||||||||| ||| ||||| ||| ||| |||||||||||| ||||||||||||||||||||    
T  5347306 cattcaaatttcttaaacaaccacaccaatttaaattccatcaacatacaaagataaacaaacattaatgaagtgaattcaaacatgtttcaacaacaat 5347405  T
Q  155 cactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    || |||||||||||||||| |||||||| ||| ||| ||||| |||||    
T  5347406 caatcaccaattcatgattcacactcaactaataaaaaatcaacaaaa 5347453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 310 - 419
Target Start/End: Complemental strand, 6445547 - 6445437
Alignment:
Q  310 atcgtgtcacgattgttgaaaa-cgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacac 408  Q
    ||||||||||||||  |||||| |||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  6445547 atcgtgtcacgattactgaaaaacgtgtcacgatttgaagcacatgatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacac 6445448  T
Q  409 gattttaggaa 419  Q
    |||||||||||    
T  6445447 gattttaggaa 6445437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 19614326 - 19614438
Alignment:
Q  57 ttcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaatca 156  Q
    |||||||||||||||||| |||| |||||||||| ||||||||||| ||||||  ||||| ||||||||||||||||||||||||||||||||| |||||    
T  19614326 ttcaaacttcacaaacaatcacatcaattcaaaccccatcaacatacaaacatgtataaacatttatgaagtgaatttaaacatgtttcaacaataatca 19614425  T
Q  157 ctcaccaattcat 169  Q
    || ||||||||||    
T  19614426 cttaccaattcat 19614438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 332 - 419
Target Start/End: Complemental strand, 55032800 - 55032713
Alignment:
Q  332 cgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||    
T  55032800 cgtgtcacgatttgaagcacatgatgaggttcattcgacattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaa 55032713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 310 - 419
Target Start/End: Original strand, 28265115 - 28265225
Alignment:
Q  310 atcgtgtcacgattgttgaaaac-gtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacac 408  Q
    ||||||||||||||  ||||||  ||||||||||||  |||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||    
T  28265115 atcgtgtcacgattactgaaaaatgtgtcacgatttgaagcacatgatgaagttcattcgacattggttaaaacgtgtcacggtggctatttcgtgacac 28265214  T
Q  409 gattttaggaa 419  Q
    |||||||||||    
T  28265215 gattttaggaa 28265225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 10934382 - 10934518
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||| ||| | ||| ||| ||| |||||||||||| ||| |  |||     
T  10934382 ctcatttttcattcaaatttcacaaacaaccataccaattcaaaccccatcaacataaaaatacaaacaaacattcatgaagtgaattcaaatacatttt 10934481  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaa 182  Q
    | ||| | |||||||||| ||||||||||||||||||    
T  10934482 agcaatattcactcaccagttcatgatttacactcaa 10934518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 53815105 - 53815196
Alignment:
Q  328 aaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||||||||||  | || | |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||    
T  53815105 aaaacgtgtcacgatttgaaacataggatgaggttcattcgacattggttaaaatgtgtcacgatggctatttcgtgacacgattttaggaa 53815196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 12253002 - 12252872
Alignment:
Q  54 tcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaa 153  Q
    ||||||||| |||| |||||||||||||||||||||| ||||||||| ||  ||||||| ||  |||  |||| |||||| |||||| ||||||||||||    
T  12253002 tcattcaaatttca-aaacaaccacaccaattcaaacaccatcaacacattgacataaacaatcattagtgaaatgaattcaaacatatttcaacaacaa 12252904  T
Q  154 tcactcaccaattcatgatttacactcaaata 185  Q
    |||  ||||||||||||| || ||||||||||    
T  12252903 tcatacaccaattcatgaatttcactcaaata 12252872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 17532572 - 17532493
Alignment:
Q  340 gatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||    
T  17532572 gattttgagcacaggatgaggttcattcgatattggttaaaacgtgtcacgatgactatttcgtgacacgattttaggaa 17532493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 30098897 - 30098767
Alignment:
Q  54 tcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaa 153  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||| || ||  ||| ||| |||||||| |||||||||||||||||||    
T  30098897 tcattcaaacttca-aaacaaccacaccaattaaaaatccatcaacatagaaacatcaacaatcattaatggagtgaattcaaacatgtttcaacaacaa 30098799  T
Q  154 tcactcaccaattcatgatttacactcaaata 185  Q
    |||   |||||  ||||| || ||||||||||    
T  30098798 tcatataccaaaccatgaatttcactcaaata 30098767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 216
Target Start/End: Complemental strand, 16219112 - 16218952
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    ||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||||| ||||          ||||| |||||||||| ||||| || ||    
T  16219112 ctcaattttcagtcaaacttcatgaacaaccacaccaattcaaaccccatcaacatacaaac----------atttaagaagtgaattcaaacacgtctc 16219023  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    |||||||||| || || |||  ||||||||||||||| |||  || |||||||||||  ||||| ||||||    
T  16219022 aacaacaatctcttactaatctatgatttacactcaattaatcaaaaatcatcaaaacaacttatcaacaa 16218952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 415
Target Start/End: Complemental strand, 54736730 - 54736631
Alignment:
Q  316 tcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgatttta 415  Q
    ||||||||||| ||||| |||||| ||||  |||| | |||||||||||||||  ||| ||||||||||||||||||| |||||| ||||||||||||||    
T  54736730 tcacgattgttaaaaacatgtcacaatttgaagcataggatgaggttcattcggtattggttaaaacgtgtcacgatgtctatttcgtgacacgatttta 54736631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 35411675 - 35411740
Alignment:
Q  216 atgatggcagtctgtcattcca-catttttagagtctttttatgatatttttgagttcacaagcaa 280  Q
    |||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  35411675 atgatgacagtctgtcatttcaacatttttagagtctttttatgatatttttgagttcacaagcaa 35411740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 9380143 - 9380198
Alignment:
Q  307 aaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggtt 362  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  9380143 aaaatcgtgtcacggttgttgaaaacgtgtcacgatttagagcacaggatgaggtt 9380198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 417
Target Start/End: Complemental strand, 10107531 - 10107405
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||||||||||||||||||||||||||||||||||||||             |||||||||| ||| |||||||  |||| ||| ||| |||||| |||    
T  10107531 caagaaaaatagaagattttgaagaaagcaaaatcgtgtc-------------acgtgtcacggtttggagcacagaatgaagttaatttgacattggtt 10107445  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    |||||| || ||||||| ||||| ||||||||||||||||    
T  10107444 aaaacgcgttacgatggttatttcgtgacacgattttagg 10107405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 415
Target Start/End: Original strand, 54460491 - 54460596
Alignment:
Q  310 atcgtgtcacgattgttgaaaa-cgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacac 408  Q
    ||||||||||||||  | |||| ||||||||||||| || || | |||||| ||||||| | ||| |||||||||||||||||||||||||| |||||||    
T  54460491 atcgtgtcacgattactaaaaagcgtgtcacgatttggaacataggatgag-ttcattcaagattggttaaaacgtgtcacgatggctatttcgtgacac 54460589  T
Q  409 gatttta 415  Q
    |||||||    
T  54460590 gatttta 54460596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 19302357 - 19302300
Alignment:
Q  224 agtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||| |||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  19302357 agtccgtcatttcatatttttagagtctttttatgatatttttgagttcacaagcaag 19302300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 34984758 - 34984693
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||| ||||| |||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  34984758 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaagcaaga 34984693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 31548563 - 31548615
Alignment:
Q  229 gtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  31548563 gtcatttcacatttttagagtctttttatgatatttttgagttcacaaccaag 31548615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 53814971 - 53815035
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  53814971 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaag 53815035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 55032833 - 55032789
Alignment:
Q  279 aagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  55032833 aagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 55032789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 9380012 - 9380075
Alignment:
Q  218 gatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||| ||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  9380012 gatgacagtcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaag 9380075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 10880798 - 10880841
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10880798 atttttagagtctttttatgatatttttgagttcacaagcaaga 10880841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 16243188 - 16243231
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  16243188 atttttagagtctttttatgatatttttgagttcacaagcaaga 16243231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 27052373 - 27052479
Alignment:
Q  76 cacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcatga-ttt 174  Q
    ||||| ||||||||  ||||||| ||| |||  |||| ||| |||||||||||||||| ||| ||||||||||||||| |||||| |||||||||| |||    
T  27052373 cacactaattcaaatcccatcaatatacaaatgtaaacaaacatttatgaagtgaattcaaagatgtttcaacaacaaacactca-caattcatgatttt 27052471  T
Q  175 acactcaa 182  Q
    ||||||||    
T  27052472 acactcaa 27052479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 43808900 - 43808943
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43808900 atttttagagtctttttatgatatttttgagttcacaagcaaga 43808943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 54460367 - 54460430
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaa 280  Q
    ||||| ||||| |||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  54460367 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaa 54460430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 415
Target Start/End: Original strand, 9392057 - 9392108
Alignment:
Q  364 attcgacattagttaaaacgtgtcacgatggctattttgtgacacgatttta 415  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  9392057 attcgacattggctaaaacgtgtcacgatggctatttcgtgacacgatttta 9392108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 19305534 - 19305483
Alignment:
Q  230 tcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||||||    
T  19305534 tcatttcatatttttagagtctttttataatatttttgagttcacaagcaag 19305483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 373
Target Start/End: Complemental strand, 22994513 - 22994414
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaa-cgtgtcacgatttagagcacatgatgaggttcattcgacatt 373  Q
    ||||||||||||  ||||||| ||  |||||  |||| ||| |||| |||||||||| ||||||||||||| |||||||| ||||||| |||||||||||    
T  22994513 aagcaagaaaaactgaagattgtggtgaaagtgaaatagtgacacggttgttgaaaaacgtgtcacgatttggagcacataatgaggtgcattcgacatt 22994414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 8462392 - 8462338
Alignment:
Q  361 ttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgatttta 415  Q
    |||||||||||||  ||||||||| ||||||||||||||| ||||||||||||||    
T  8462392 ttcattcgacattgattaaaacgtatcacgatggctatttcgtgacacgatttta 8462338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 52 - 178
Target Start/End: Complemental strand, 14305603 - 14305477
Alignment:
Q  52 tttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaac 151  Q
    |||||| |||||||| |||||||| ||| ||||||||||| || ||||||| ||||||| ||||  |||||  |||||| |  ||||| |||| | |||     
T  14305603 tttcatccaaacttctcaaacaacaacaacaattcaaacttcaacaacatacaaacatatataatcatttaccaagtgattagaaacaggtttgaccaat 14305504  T
Q  152 aatcactcaccaattcatgatttacac 178  Q
    |||||||| | |||||||| |||||||    
T  14305503 aatcactcccaaattcatggtttacac 14305477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 29344773 - 29344707
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtcttt-ttatgatatttttgagttcacaagcaaga 282  Q
    ||||| ||||| |||||||   ||||||||||||||| |||||||||||||||||||||||||||||    
T  29344773 tgatgacagtcagtcattcactatttttagagtctttcttatgatatttttgagttcacaagcaaga 29344707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 41976320 - 41976386
Alignment:
Q  216 atgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    |||||| ||||| |||||||   ||||||||||| ||||||| ||||||||||||||||||||||||    
T  41976320 atgatgacagtcagtcattcgctatttttagagtgtttttataatatttttgagttcacaagcaaga 41976386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 54736828 - 54736786
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  54736828 atttttagagtctttttatgatacttttgagttcacaagcaag 54736786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 3839790 - 3839857
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtcttttt---atgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   ||||||||||| |||||   ||||||||||||||||||||||||||    
T  3839790 tgatgacagtcagtcattcactatttttagagtttttttttaatgatatttttgagttcacaagcaag 3839857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 10884018 - 10884082
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   ||||||||||||||||| |||||| |||||||||||||||||||    
T  10884018 tgatgacagtcagtcattcactatttttagagtctttttcatgata-ttttgagttcacaagcaag 10884082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 20729477 - 20729412
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  20729477 tgatgacagtcagtcattcgctatttttagagttttttttatgatattttttagttcacaagcaag 20729412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 23299553 - 23299489
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   ||||||||||||||||| |||||||||| |||||||||||||||    
T  23299553 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaag 23299489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 275 - 417
Target Start/End: Original strand, 18910684 - 18910826
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18910684 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattg 18910783  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  18910784 gttaaaacgtgtcacgatggctatttcatgacacgattttagg 18910826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 278 - 419
Target Start/End: Original strand, 15431247 - 15431388
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||    
T  15431247 caagagaaatagaagattttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacaggatgaggttcattcgacattggtt 15431346  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  15431347 aaaatgtgtcacgatggctatttcgtgacacgattttaggaa 15431388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 278 - 419
Target Start/End: Original strand, 15437861 - 15438002
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||    
T  15437861 caagagaaatagaagattttgaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacaggatgaggttcattcgacattggtt 15437960  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  15437961 aaaatgtgtcacgatggctatttcgtgacacgattttaggaa 15438002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 33410879 - 33410738
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||| | |||||||||||||||||| |||    
T  33410879 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgttacgatttgaagcacaaggtgaggttcattcgacattggtt 33410780  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  33410779 aaaacgtgtcacgatggctatttcgtgacacgattttaggaa 33410738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 275 - 419
Target Start/End: Complemental strand, 3798716 - 3798572
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || || | ||||||||||||||||||||     
T  3798716 aagcaagaaaaatagaagattttgaagaaagcaaaatcttgtcacgattgttgaaaatgtgtcacgatttggaacaaaggatgaggttcattcgacattg 3798617  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  3798616 gttaaaacgtgtcacgatggctatttcgtgacacgattttaggaa 3798572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 275 - 419
Target Start/End: Complemental strand, 40617732 - 40617588
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||     
T  40617732 aagcaagaaaaatagaagattttgaagaaggcaaaatcgtgccacgattgttgaaaacgtgtcacgatttagaacacaagatgaggttcattcgacattg 40617633  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
     |||||||| |||||||||||||||| ||||||||||||||||||    
T  40617632 attaaaacgagtcacgatggctatttcgtgacacgattttaggaa 40617588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 278 - 417
Target Start/End: Complemental strand, 5721888 - 5721749
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||| |||    
T  5721888 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatgaggttcattcgacattggtt 5721789  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||| ||||||||||| ||||||| ||||||||||||||||    
T  5721788 aaatcgtgtcacgatagctatttcgtgacacgattttagg 5721749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 275 - 419
Target Start/End: Complemental strand, 19861207 - 19861063
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||| ||||||||||||||  |||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||     
T  19861207 aagcaagaaaaatataagattttgaagaacacaaaattgtgtcacgattgttgaaaacgtatcacgatttggagcacaggatgaggttcattcgacattg 19861108  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  19861107 gttaaaacgtgtcaagatggctatttcgtgacacgattttaggaa 19861063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 9717034 - 9717173
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||| |||    
T  9717034 caagaaaaatagaagatttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacaatttagagcacaggatgaggttcgttcgacattggtt 9717133  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||| ||||||||||||||| ||| ||||||||||||||||    
T  9717134 aaatcgtgtcacgatggctctttcgtgacacgattttagg 9717173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 17959772 - 17959942
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||  |||| |||||||||||||||||||||||    
T  17959772 ctcatttttcattcaaacttcacaaacaaccacacaaattcaaaccccatcaagatacaaacataaataagcatttgtgaagtgaatttaaacatgtttc 17959871  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||||| ||||||||| |||||||||| ||||||||||||||| || ||||| |||||  ||||| ||||||    
T  17959872 aacaataatcactcatcaattcatgacttacactcaaataagcaaaaatcaccaaaacaacttatcaacaa 17959942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 275 - 419
Target Start/End: Complemental strand, 19865563 - 19865419
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||| ||||||| ||||||||||||||||||||     
T  19865563 aagcaagaaaaatagaagattttgaagaaaacaaaatcgtgtcacgattattgaaaatgtatcacgatttggagcacaggatgaggttcattcgacattg 19865464  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||||  | ||||||||||| ||||||||||||||||||    
T  19865463 gttaaaacgtgctaagatggctatttcgtgacacgattttaggaa 19865419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 275 - 425
Target Start/End: Original strand, 49269815 - 49269964
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || |||  ||||| |||||||||||||     
T  49269815 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtatcacgattgttgaaaacgtgtcacgatttgaagaacaaaatgagattcattcgacattg 49269914  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaagcatat 425  Q
    ||||||||||||||| || ||||||| |||||||||||||||||| |||||    
T  49269915 gttaaaacgtgtcacaat-gctatttcgtgacacgattttaggaaccatat 49269964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 278 - 415
Target Start/End: Original strand, 5669711 - 5669848
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  | ||||  |||||||| |||||||||| |||    
T  5669711 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacaatttgaaacacaaaatgaggtttattcgacattggtt 5669810  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgatttta 415  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  5669811 aaaacgtgtcacggtggctatttcgtgacacgatttta 5669848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 275 - 419
Target Start/End: Original strand, 5680549 - 5680693
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| |  |||||||||||||||||||     
T  5680549 aagcaagaaaaatagaagattttgaaaaaagcaaaatcatgtcacgattgttgaaaacgtgtcacaatttagagcatagaatgaggttcattcgacattg 5680648  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||||||||  | |||||||  |||||||||||||||||    
T  5680649 gttaaaacgtgtcacttttgctatttcttgacacgattttaggaa 5680693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 275 - 419
Target Start/End: Original strand, 12237434 - 12237578
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |  ||| ||||||||||||||||||||     
T  12237434 aagcaagagaaatagaagattttgaagaaagcaaaatcgtgtcacgattgtcgaaaatgtgtcacaatttaaaatacaggatgaggttcattcgacattg 12237533  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||    
T  12237534 gttaaaatatgtcacgatggctatttcgtgacacgattttaggaa 12237578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 11776131 - 11776296
Alignment:
Q  50 attttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaaca 149  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||| ||| ||||||||| ||||||||  ||||||||    
T  11776131 attttcattcaaacttcacaaacaaccacatcaattcaaac-ccatcaacatacaaacataaacaaacattcatgaagtgattttaaacacatttcaaca 11776229  T
Q  150 acaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    |||||||||||||||||||||||| |||||||| |||  || |||||| ||||  ||||| ||||||    
T  11776230 acaatcactcaccaattcatgattcacactcaattaatcaaaaatcattaaaacaacttatcaacaa 11776296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 15711326 - 15711491
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaa 150  Q
    |||| |||||||||| | |||||||||||| ||||||||| ||||||||| | ||||||||| ||| ||| |||||||||||| ||||||||||||||||    
T  15711326 tttttattcaaacttaaaaaacaaccacacaaattcaaaccccatcaacacacaaacataaacaaacattcatgaagtgaattcaaacatgtttcaacaa 15711425  T
Q  151 caatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||||||||||||||||||||||| |||||||| |||  || |||| ||||||  ||||||||||||    
T  15711426 caatcactcaccaattcatgattcacactcaattaatcaaaaatcttcaaaacaacttaacaacaa 15711491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 275 - 416
Target Start/End: Original strand, 53093801 - 53093941
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    ||||| ||||| | ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||     
T  53093801 aagcatgaaaagttgaagattttgaagaaagtaaaatcgtgacacgattgttgaaaacgtgtcacgaattggagcacaggatgaggttcattcgacatt- 53093899  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttag 416  Q
    | || ||||||||||||||||||||| |||||||||||||||    
T  53093900 ggtagaacgtgtcacgatggctatttcgtgacacgattttag 53093941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 56 - 202
Target Start/End: Original strand, 16571115 - 16571262
Alignment:
Q  56 attcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaaca-at 154  Q
    |||||||||||||||||||| |||||||||||||| | ||||||||| ||||||||| ||| | | |||||||||||| |||||| | |||||||||  |    
T  16571115 attcaaacttcacaaacaacaacaccaattcaaaccctatcaacatagaaacataaacaaacactcatgaagtgaattcaaacatatctcaacaacatgt 16571214  T
Q  155 cactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||||||    
T  16571215 cactcaccaattcatgatttacactcaattaataaaaaatcatcaaaa 16571262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 9566478 - 9566616
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||  ||||||||| |||| |||||| ||  ||| |||||||||||| |||||||||||    
T  9566478 ctcatttttcattcaaacttca-aaacaaccacaccaatccaaatcccatcaacacataagcataaacaatcattaatgaagtgaattcaaacatgtttc 9566576  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaata 185  Q
    |||||||||||  ||||||||||||| |||||||||||||    
T  9566577 aacaacaatcatacaccaattcatgaattacactcaaata 9566616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 21981859 - 21982029
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||  ||||||||| |  |||||||| ||| ||| |||||||||||| |||||||||||    
T  21981859 ctcatttttcattcaaacttcaaaaacaaccacaccaatccaaatcccatcaacacacgaacataaacaaacattaatgaagtgaattcaaacatgtttc 21981958  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    |||||||||| | || |||||||||||||| || |||||||  || | |||||||||  ||| ||||||||    
T  21981959 aacaacaatcccacatcaattcatgatttatacgcaaataatcaaaattcatcaaaacaactcaacaacaa 21982029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 12334865 - 12334735
Alignment:
Q  54 tcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaa 153  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||| |||||||| |||||| ||| |||||||||||| | ||||||||||||| |||    
T  12334865 tcattcaaacttca-aaacaaccacaccaattcaaaacccatcaacacataaacatgaataaacattaatgaagtgaattcagacatgtttcaacaccaa 12334767  T
Q  154 tcactcaccaattcatgatttacactcaaata 185  Q
    |||  ||||||||||||| || ||||||||||    
T  12334766 tcatacaccaattcatgaatttcactcaaata 12334735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 37104124 - 37104039
Alignment:
Q  332 cgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  37104124 cgtgtcacgatttgaagcacaggatgaggttcattcgacattggttaaatcgtgtcacgatggctatttcgtgacacgattttagg 37104039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 14571034 - 14571090
Alignment:
Q  225 gtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14571034 gtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 14571090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 27013396 - 27013454
Alignment:
Q  361 ttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  27013396 ttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaa 27013454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 5680468 - 5680525
Alignment:
Q  216 atgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttca 273  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5680468 atgatgacagactgtcattccacatttttagagtctttttatgatatttttgagttca 5680525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 19605981 - 19605863
Alignment:
Q  52 tttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaac 151  Q
    |||||| ||| |||||||||| || ||| |||||||||| |||  |||||| ||||||| ||||  || ||| ||||||||||| |||||||| |||||     
T  19605981 tttcatccaatcttcacaaactacaacaacaattcaaaccccaataacatacaaacatatataatcatatataaagtgaatttacacatgtttgaacaat 19605882  T
Q  152 aatcactcaccaattcatg 170  Q
    ||||||||| |||||||||    
T  19605881 aatcactcatcaattcatg 19605863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 37104158 - 37104113
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37104158 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 37104113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 40794214 - 40794256
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  40794214 atttttagagtctttttatgatatttttgagttcacaagcaag 40794256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 53010436 - 53010393
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  53010436 atttttagagtctttttatgatatttttgagttcacaagtaaga 53010393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 3718358 - 3718400
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  3718358 atttttagagtatttttatgatatttttgagttcacaagcaag 3718400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 14571106 - 14571144
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcg 313  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14571106 aagcaagaaaaatagaagattttgaagaaagcaaaatcg 14571144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 21419001 - 21419043
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  21419001 atttttagtgtctttttatgatatttttgagttcacaagcaag 21419043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 29324001 - 29324043
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  29324001 atttttagagtctttttatgataattttgagttcacaagcaag 29324043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 34320822 - 34320780
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  34320822 atttttagagtctttttatgataattttgagttcacaagcaag 34320780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 44809882 - 44809840
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  44809882 atttttagagtctttttatgataattttgagttcacaagcaag 44809840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 24045057 - 24044992
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||| ||||| |||||||   ||||||||||||||||| |||||||||||||||||||| |||||    
T  24045057 tgatgacagtcagtcattcgttatttttagagtctttttttgatatttttgagttcacaaacaaga 24044992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 12782106 - 12782170
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   |||||||||||| |||||||||||||||||||| |||||||||    
T  12782106 tgatgacagtcagtcattcgctatttttagagtcattttatgatatttttgagtttacaagcaag 12782170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 52007431 - 52007367
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   ||||||||||||||||||||||||| ||||||||| |||||||    
T  52007431 tgatgacagtcagtcattcgctatttttagagtctttttatgatattgttgagttcaaaagcaag 52007367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 44164000 - 44164067
Alignment:
Q  216 atgatggcagtctgtcattccacatttttagagtctttt-tatgatatttttgagttcacaagcaaga 282  Q
    |||||| ||||| |||||||   ||||||| |||||||| ||||||||||||||||||||||||||||    
T  44164000 atgatgacagtcagtcattcactatttttaaagtcttttttatgatatttttgagttcacaagcaaga 44164067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 19819950 - 19820016
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgata-tttttgagttcacaagcaaga 282  Q
    ||||| ||||| |||||||   ||||||| ||||||||||||||| |||||||||||||||||||||    
T  19819950 tgatgacagtcagtcattcgctatttttaaagtctttttatgatattttttgagttcacaagcaaga 19820016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 49269735 - 49269789
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagtt 271  Q
    ||||| ||||| ||||||  ||||||||||||| |||||||||||||||||||||    
T  49269735 tgatgacagtcagtcattttacatttttagagtttttttatgatatttttgagtt 49269789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 15430766 - 15430701
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   ||||| ||||||||||| ||||||||||||||||||||||||||    
T  15430766 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaag 15430701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 15437380 - 15437315
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   ||||| ||||||||||| ||||||||||||||||||||||||||    
T  15437380 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaag 15437315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 27013229 - 27013294
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttt-tatgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   |||||||||||||||| ||||||||||||||||||||| |||||    
T  27013229 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcacaggcaag 27013294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 27677944 - 27677900
Alignment:
Q  239 atttttagagtcttttt-atgatatttttgagttcacaagcaaga 282  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||    
T  27677944 atttttagagtcttttttatgatatttttgagttcacaatcaaga 27677900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 12344298 - 12344244
Alignment:
Q  54 tcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacat 109  Q
    |||||||||||||| ||||||||||||||| |||||  ||||||||| ||||||||    
T  12344298 tcattcaaacttca-aaacaaccacaccaactcaaaacccatcaacacataaacat 12344244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 35509229 - 35509264
Alignment:
Q  247 agtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||||| ||||||||||||||||||||||||||||    
T  35509229 agtctttatatgatatttttgagttcacaagcaaga 35509264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 19826701 - 19826767
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgata-tttttgagttcacaagcaaga 282  Q
    ||||| ||||| |||||||   ||||||||||||||||||||| | |||||||||||||||| ||||    
T  19826701 tgatgacagtcagtcattcgctatttttagagtctttttatgaaattttttgagttcacaagtaaga 19826767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 27692003 - 27691959
Alignment:
Q  239 atttttagagtcttttt-atgatatttttgagttcacaagcaaga 282  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  27692003 atttttagagtcttttttacgatatttttgaattcacaagcaaga 27691959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 446
Target Start/End: Original strand, 49270024 - 49270052
Alignment:
Q  418 aagcatatcatagtggcatatatttttga 446  Q
    |||||||||||||||||||||||||||||    
T  49270024 aagcatatcatagtggcatatatttttga 49270052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 224 - 417
Target Start/End: Original strand, 26260 - 26467
Alignment:
Q  224 agtctgtcattccacattttt-agagtctttttatgatatttttgagttcacaagcaa-------------gaaaaatagaagattttgaagaaagcaaa 309  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||    
T  26260 agtctgtcattccacattttttagagtctttttatgatatttttgagttcacaagcaaacataagcagcatgaaaaatagaagattttgaagaaagcaaa 26359  T
Q  310 atcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacg 409  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||||    
T  26360 atcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtaacacg 26459  T
Q  410 attttagg 417  Q
     |||||||    
T  26460 gttttagg 26467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 275 - 417
Target Start/End: Original strand, 26556590 - 26556732
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  26556590 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggtttattcgacattg 26556689  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  26556690 gttaaaacgtgtcacgatggctatttcatgacacgattttagg 26556732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 217 - 417
Target Start/End: Original strand, 8276012 - 8276234
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaag----------------------caagaaaaatagaagat 294  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||    
T  8276012 tgatgacagtctgtcattccatatttttagagtctttttatgatatttttgagttcacaagcaagctcaagcagcaagaaaagcaagaaaaatagaagat 8276111  T
Q  295 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatgg 394  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8276112 tttgaagaaaacaaaatcgtgtcatgattgttgaaaacgtatcacgatttggagcacatgatgaggttcattcgacattggttaaaacgtgtcacgatgg 8276211  T
Q  395 ctattttgtgacacgattttagg 417  Q
    |||||| ||||||||||||||||    
T  8276212 ctatttcgtgacacgattttagg 8276234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 10431469 - 10431608
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | |    
T  10431469 caagaaaaatataagattttgaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttagagcacaggatgaggttcactcgacattggct 10431568  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  10431569 aaaacgtgtcacgatggctatttcgtgacacgattttagg 10431608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 11774246 - 11774110
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| |||||||||||||| || ||||||||||||||||||||||  |||||||||| ||||||||| ||||||| ||||||||| || |||||| ||||    
T  11774246 ctcatttttcattcaaactccataaacaaccacaccaattcaaaccacatcaacatacaaacataaacaaatattcatgaagtgagttcaaacatatttc 11774147  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaa 182  Q
    ||||||||||||||||||||||||||||| |||||||    
T  11774146 aacaacaatcactcaccaattcatgattttcactcaa 11774110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 29731025 - 29731192
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaa 150  Q
    ||||||||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||| ||| ||||| |||||||||| ||||||||||||||||    
T  29731025 ttttcattcaaacttcaaaaacaaccacaccaattcaaac-ccaacaacatacaaacataaacaaacatttaagaagtgaattcaaacatgtttcaacaa 29731123  T
Q  151 caatcactcaccaat---tcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||||||| |||||||   |||||||||||||||||||||  || | |||||||||  ||| ||||||||    
T  29731124 caatcacacaccaattcatcatgatttacactcaaataatcaaaattcatcaaaacaactcaacaacaa 29731192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 29741922 - 29741755
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaa 150  Q
    ||||||||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||| ||| ||||| |||||||||| ||||||||||||||||    
T  29741922 ttttcattcaaacttcaaaaacaaccacaccaattcaaac-ccaacaacatacaaacataaacaaacatttaagaagtgaattcaaacatgtttcaacaa 29741824  T
Q  151 caatcactcaccaat---tcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||||||| |||||||   |||||||||||||||||||||  || | |||||||||  ||| ||||||||    
T  29741823 caatcacacaccaattcatcatgatttacactcaaataatcaaaattcatcaaaacaactcaacaacaa 29741755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 278 - 419
Target Start/End: Original strand, 4542157 - 4542297
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||||||| |||||| ||||| ||||| | ||||| |||||||||||||| |||    
T  4542157 caagaaaaatagaagattttgaggaaagcaaatttgtgtcacgattgttgaaaatgtgtcatgatttggagcataggatga-gttcattcgacattggtt 4542255  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||| ||||||||||| ||||| ||||||| ||||||||||    
T  4542256 aaaacttgtcacgatggatatttcgtgacacaattttaggaa 4542297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 278 - 417
Target Start/End: Complemental strand, 2442194 - 2442056
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| |||||||||  |||| | ||||| ||||| |||||||| | |    
T  2442194 caagaaaaatagaagattctgaggaaagcaaattcgtgtcacgattgttgaaaacgtatcacgatttgaagcataggatga-gttcactcgacattggct 2442096  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  2442095 aaaacgtatcacgatggctatttcgtgacacgattttagg 2442056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 50 - 169
Target Start/End: Original strand, 23099798 - 23099916
Alignment:
Q  50 attttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaaca 149  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||  | ||| ||||||||||||||||| ||||||||||||||    
T  23099798 attttcatttaaacttcacaaacaaccacaccaattcaaaccccatcaacatataaacatgta-aaacatttatgaagtgaatttgaacatgtttcaaca 23099896  T
Q  150 acaatcactcaccaattcat 169  Q
    | ||||||| | ||||||||    
T  23099897 ataatcacttatcaattcat 23099916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 16094641 - 16094797
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| |||| |||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||  ||||  ||||||||||||||||| ||||||||||    
T  16094641 ctcattttttattcaaacttcacaaacaactacaccaattcaaaccccaccaacatacaaacatgtataaccatttatgaagtgaatttgaacatgtttc 16094740  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    || |  ||||||||| ||||||||| |||||||| || ||||  | |||||||||||    
T  16094741 aatagtaatcactcatcaattcatggtttacacttaattaagcgaaaatcatcaaaa 16094797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 50 - 202
Target Start/End: Original strand, 16196550 - 16196702
Alignment:
Q  50 attttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaaca 149  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| |||||||||||| || ||||  |||||||||||||||||||| ||||| | |||    
T  16196550 attttcattcaaacttcacaaacaaccacactgattcaaaccccaacaacatataaacttatataatcatttatgaagtgaatttaaatatgttcctaca 16196649  T
Q  150 acaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    | ||| ||||| ||||||||| ||||||||  | |||| || |||||||||||    
T  16196650 ataattactcatcaattcatggtttacacttgattaagcaaaaatcatcaaaa 16196702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 20148524 - 20148675
Alignment:
Q  50 attttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaaca 149  Q
    ||||||||||||||||||| ||||||||||||||||||||  ||| || |||| ||||||| |||   |||||||||||||||||||||||||| |||||    
T  20148524 attttcattcaaacttcactaacaaccacaccaattcaaatcccaacagcatacaaacatatatactcatttatgaagtgaatttaaacatgttccaaca 20148623  T
Q  150 acaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaa 201  Q
    | ||||||||  ||||||||| |||||||| || |||| || ||||| ||||    
T  20148624 ataatcactcgtcaattcatggtttacacttaattaagcaaaaatcaccaaa 20148675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 328 - 419
Target Start/End: Complemental strand, 45288004 - 45287913
Alignment:
Q  328 aaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||| || || | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  45288004 aaaacgtgtcacgatttggaacataagatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaa 45287913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 328 - 419
Target Start/End: Complemental strand, 45291340 - 45291249
Alignment:
Q  328 aaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||| || || |  ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  45291340 aaaacgtgtcacgatttggaacatagaatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaa 45291249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 16175156 - 16175252
Alignment:
Q  83 attcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcatgatttacact 179  Q
    |||||||| ||| ||||||| ||||||  ||||  |||||||||||||| ||||||||||| |||||| ||||||||| ||||||||| ||||||||    
T  16175156 attcaaaccccaacaacatacaaacatttataatcatttatgaagtgaaattaaacatgttccaacaataatcactcatcaattcatggtttacact 16175252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 17161426 - 17161329
Alignment:
Q  68 caaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattc 167  Q
    |||||||| || ||||||||||| ||||||||||||||||||  ||||   |||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  17161426 caaacaactacgccaattcaaaccccatcaacatataaacatgtataa---tttatgaa-tgaatttaaacatgttccaacaataatcactcatcaattc 17161331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 45291476 - 45291410
Alignment:
Q  215 aatgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||| ||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  45291476 aatgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaag 45291410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 202
Target Start/End: Complemental strand, 8327392 - 8327247
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    ||||||||| |||||||||||| |||| || ||| |||||||||| ||||||||||| |||||      | ||     |||||||||| |||||||||||    
T  8327392 ctcaattttaattcaaacttcataaactactacatcaattcaaaccccatcaacatacaaaca------acta-----gaagtgaattcaaacatgtttc 8327304  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    ||||| ||||||||| | |||| |||||||||||| | ||| ||| |||||||||||    
T  8327303 aacaataatcactcatcgattcgtgatttacactctattaataaaaaatcatcaaaa 8327247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 9865642 - 9865577
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||| ||||| |||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  9865642 tgatgacagtcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaaga 9865577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 45288138 - 45288074
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  45288138 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaag 45288074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 202
Target Start/End: Complemental strand, 8324207 - 8324062
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    ||||||||| |||||||||||| |||| || ||| |||||||||| ||||||||||| |||||      | ||     |||||||||| |||||||||||    
T  8324207 ctcaattttaattcaaacttcataaactactacatcaattcaaaccccatcaacatacaaaca------acta-----gaagtgaattcaaacatgtttc 8324119  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    |||||||||||||||   |||| |||||||||||| | ||| | | |||||||||||    
T  8324118 aacaacaatcactcattgattcgtgatttacactctattaatacaaaatcatcaaaa 8324062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 9274034 - 9273970
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||| |||||||| | ||||||||||||||||||| |||||||||||||||    
T  9274034 tgatgacagtccgtcatttcacattttcaaagtctttttatgatattttggagttcacaagcaag 9273970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 20081640 - 20081576
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   ||||||||||| |||||||||||||||||||||||||||||||    
T  20081640 tgatgacagtcagtcattcactatttttagagtgtttttatgatatttttgagttcacaagcaag 20081576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 29741282 - 29741238
Alignment:
Q  142 tttcaacaacaatcactcaccaattcatgatttacactcaaataa 186  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  29741282 tttcaacaacaatcacacaccaattcatgatttacactcaaataa 29741238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 4694745 - 4694788
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  4694745 atttttagagtctttctatgatatttttgagttcacaagcaaga 4694788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 17729995 - 17730037
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  17729995 atttttagagtccttttatgatatttttgagttcacaagcaag 17730037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 13765496 - 13765448
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaaca 100  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  13765496 ttttcattcaaacttca-aaacaaccacaccaattcaaattccatcaaca 13765448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 4596902 - 4596859
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||    
T  4596902 atttttagagtctttttatgatatttttgagctcacaagaaaga 4596859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 9080398 - 9080440
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  9080398 atttttagagtctttttatgtaatttttgagttcacaagcaag 9080440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 10344638 - 10344680
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  10344638 atttttagagtcttcttatgaaatttttgagttcacaagcaag 10344680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 13765432 - 13765379
Alignment:
Q  130 aatttaaacatgtttcaacaacaatcactcaccaattcatgatttacactcaaa 183  Q
    |||| ||||||||||||||||||||||| | |||||||||||||| ||| ||||    
T  13765432 aattcaaacatgtttcaacaacaatcacactccaattcatgatttccacccaaa 13765379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 23386721 - 23386758
Alignment:
Q  50 attttcattcaaacttcacaaacaaccacaccaattca 87  Q
    |||||||||||||||||| |||||||||||||||||||    
T  23386721 attttcattcaaacttcataaacaaccacaccaattca 23386758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 275 - 446
Target Start/End: Original strand, 31862952 - 31863126
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  31862952 aagcaagaaaaatagaaaattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaagttcattcgacattg 31863051  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaagcatatcatagt---ggcatatatttttga 446  Q
     ||||| ||||||||||||||||||| |||||||||||||| ||| |||| ||||||   |||||||||||||||    
T  31863052 tttaaatcgtgtcacgatggctatttcgtgacacgattttaagaaacataccatagtggcggcatatatttttga 31863126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 223 - 419
Target Start/End: Original strand, 37214772 - 37214990
Alignment:
Q  223 cagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaag----------------------caagaaaaatagaagattttgaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||||    
T  37214772 cagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaa 37214871  T
Q  301 gaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattt 400  Q
    |||||||||||||| |||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||    
T  37214872 gaaagcaaaatcgtatcacaattgttgaaaacatgtcacgatttggagcacaggatgaggttcattcgacattggttaaaacgtgtcatgatggctattt 37214971  T
Q  401 tgtgacacgattttaggaa 419  Q
     ||||||||||||||||||    
T  37214972 cgtgacacgattttaggaa 37214990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 217 - 419
Target Start/End: Complemental strand, 22938055 - 22937831
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag----------------------aaaaatagaagat 294  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||    
T  22938055 tgatgacagtctgtcattccacgtttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagat 22937956  T
Q  295 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatgg 394  Q
    ||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  22937955 tttgaagaaagcaaaatcgtgccacggttgttgaaaacgtatcacgatttggagcacaagatgaggttcattcgacattgattaaaacgtgtcacgatgg 22937856  T
Q  395 ctattttgtgacacgattttaggaa 419  Q
    |||||| ||||||||||||||||||    
T  22937855 ctatttcgtgacacgattttaggaa 22937831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 217 - 417
Target Start/End: Original strand, 32837083 - 32837305
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag----------------------aaaaatagaagat 294  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||    
T  32837083 tgatgacagtatgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagaaagaaaaatagaagat 32837182  T
Q  295 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatgg 394  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||| ||||||||||||| |||||||||||||||||||     
T  32837183 tttgaagaaagcaaaatcgtgtcatgattgttgaaaacgtgtcacgatttggagcataggatgagtttcattcgacattggttaaaacgtgtcacgatga 32837282  T
Q  395 ctattttgtgacacgattttagg 417  Q
    |||||| ||||||||||||||||    
T  32837283 ctatttcgtgacacgattttagg 32837305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 42061569 - 42061708
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||    
T  42061569 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacatgatgaggttcattcgacattggtt 42061668  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||| ||||||||||| ||||||| |||||| |||||||||    
T  42061669 aaatcgtgtcacgatagctatttcgtgacatgattttagg 42061708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 17169480 - 17169642
Alignment:
Q  17 catcacctagttcattttcccccaaaaccctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaa 116  Q
    |||||| ||||||||||||| |||||| || |||||||||||||||||||| ||||||| ||||||||| |||| ||||||||||| |||||||||  ||    
T  17169480 catcacttagttcattttccaccaaaatccacaattttcattcaaacttcataaacaactacaccaatttaaaccccatcaacatacaaacataaaccaa 17169579  T
Q  117 tatttatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcatgatttacact 179  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17169580 catttatgaagtgaattcaaacatgtttcaacaacaatcactcaccaattcatgatttacact 17169642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 217 - 417
Target Start/End: Original strand, 43490793 - 43491015
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaa----------------------gcaagaaaaatagaagat 294  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||    
T  43490793 tgatgacagtctgtcatttcacatttttagagtctttttatgatatttttgagttcacaaacaagcttaagcagcaagaaaagcaagaaaaatagaagat 43490892  T
Q  295 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatgg 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||| | |||| |||||||||| ||||||||     
T  43490893 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgattaggagcacaggatgaggttcatttggcattggttaaaacgtatcacgatgt 43490992  T
Q  395 ctattttgtgacacgattttagg 417  Q
    |||||| || |||||||||||||    
T  43490993 ctatttcgtaacacgattttagg 43491015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 278 - 415
Target Start/End: Complemental strand, 28442098 - 28441961
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| | |    
T  28442098 caagaaaaatataagattttgaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttagagcacaggatgaggttcactcaacattggct 28441999  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgatttta 415  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  28441998 aaaacgtgtcatgatggctatttcgtgacacgatttta 28441961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 307 - 435
Target Start/End: Complemental strand, 21336609 - 21336481
Alignment:
Q  307 aaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgac 406  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  21336609 aaaatcgtgtcacggttgttgaaaacatgtcacgatttagagcacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgac 21336510  T
Q  407 acgattttaggaagcatatcatagtggca 435  Q
    ||||||||||||| |||| ||||||||||    
T  21336509 acgattttaggaaacataccatagtggca 21336481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 307 - 446
Target Start/End: Complemental strand, 21827908 - 21827766
Alignment:
Q  307 aaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgac 406  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  21827908 aaaatcgtgtcacggttgttgaatacgtgtcacgatttagaacacaggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgac 21827809  T
Q  407 acgattttaggaagcatatcatagt---ggcatatatttttga 446  Q
    ||||||||||||| |||| ||||||   |||||||||||||||    
T  21827808 acgattttaggaaacataccatagtggcggcatatatttttga 21827766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 17364075 - 17364198
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| |||||||||||||||||||||||||||||| || |||||| ||||||||||  ||||||||||||| |||||| |||||||||||| ||||||||    
T  17364075 ctcatttttcattcaaacttcacaaacaaccacacaaagtcaaaccccatcaacatgcaaacataaataaacatttattaagtgaatttaagcatgtttc 17364174  T
Q  146 aacaacaatcactcaccaattcat 169  Q
    ||||| ||||||||||||||||||    
T  17364175 aacaataatcactcaccaattcat 17364198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 45 - 216
Target Start/End: Original strand, 26727628 - 26727797
Alignment:
Q  45 cctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgttt 144  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||  |||| ||||| |||||||  |||| |||||| ||||||||| |||  |||||    
T  26727628 cctcatttttcattcaaacctcataaacaaccacaccaattcaaacctcatccacatacaaacatatgtaaacatttattaagtgaattcaaa--tgttt 26727725  T
Q  145 caacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    |||||||||||||||||||||||||||||||||||| | |||| || |||||||| ||  ||||| ||||||    
T  26727726 caacaacaatcactcaccaattcatgatttacactctagtaagcaaaaatcatcataacaacttatcaacaa 26727797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 19316662 - 19316496
Alignment:
Q  50 attttcattcaaacttcacaaa-caaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaac 148  Q
    |||||||||||| ||||| ||| ||||||||||||||||||| ||| ||||||||||||||||| ||| ||| || | ||||||| |||||| |||||||    
T  19316662 attttcattcaatcttcaaaaaacaaccacaccaattcaaac-ccaacaacatataaacataaacaaacattcataatgtgaattcaaacatctttcaac 19316564  T
Q  149 aacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    |||||| | |||||||||||||||||| |||||||||   || |||||||||||| ||| ||||||||    
T  19316563 aacaattaatcaccaattcatgatttatactcaaatagttaaaaatcatcaaaataactcaacaacaa 19316496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 24194098 - 24194257
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatc--------aacatataaacataaataaatatttatgaagtgaatttaaacatgt 142  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||         |||||| ||||||||| ||| ||  |||||||||||| ||||||||    
T  24194098 ttttcattcaaacttcacaaacaaccacactaattcaaaccccatgcccccatgaacatacaaacataaacaaacatccatgaagtgaattcaaacatgt 24194197  T
Q  143 ttcaacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||| ||| |||||||||||    
T  24194198 ttcaacaacaatcactcacaaattcatgattcacactcaattaataaaaaatcatcaaaa 24194257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 19268359 - 19268489
Alignment:
Q  54 tcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaa 153  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||| ||||||||||||| | ||| |||||||||||| ||||| |||||||||||||    
T  19268359 tcattcaaacttca-aaacaaccacaccaattcaaaacccatcaacacataaacataaatagacattaatgaagtgaattcaaacacgtttcaacaacaa 19268457  T
Q  154 tcactcaccaattcatgatttacactcaaata 185  Q
    |||  || |||||||||| || ||||||||||    
T  19268458 tcatacatcaattcatgaatttcactcaaata 19268489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 26132602 - 26132719
Alignment:
Q  61 aacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaatcactca 160  Q
    ||||||||||||||| ||| ||||||||| |||| ||||||| ||||||| ||||  |||||| || |||||||| |||||||||||||| |||||||||    
T  26132602 aacttcacaaacaacaacaacaattcaaa-tccaacaacataaaaacatatataatcatttatcaaatgaatttagacatgtttcaacaataatcactca 26132700  T
Q  161 ccaattcatgatttacact 179  Q
    |||||||||||||||||||    
T  26132701 ccaattcatgatttacact 26132719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 13456880 - 13457009
Alignment:
Q  50 attttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaaca 149  Q
    |||| |||||||||||||||||||||||||| ||||||||| ||| ||||||| || | ||  |||  |||||||||||||||||||||||||| |||||    
T  13456880 atttacattcaaacttcacaaacaaccacacaaattcaaaccccaacaacatacaagcttatgtaatcatttatgaagtgaatttaaacatgttccaaca 13456979  T
Q  150 acaatcactcaccaattcatgatttacact 179  Q
    | ||||||||| ||||| ||| ||||||||    
T  13456980 ataatcactcatcaattgatggtttacact 13457009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 22468498 - 22468629
Alignment:
Q  56 attcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaatc 155  Q
    |||||||  ||| |||||||||||||||||||||  ||||||||||| ||||||||| ||| ||||||||| | |||| ||||||||||||| || |||     
T  22468498 attcaaaactcataaacaaccacaccaattcaaatcccatcaacatacaaacataaacaaacatttatgaaataaattcaaacatgtttcaagaataatg 22468597  T
Q  156 actcaccaattcatgatttacactcaaataag 187  Q
    ||| |||||||||||||| |||||||| ||||    
T  22468598 actgaccaattcatgattcacactcaattaag 22468629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 310 - 415
Target Start/End: Original strand, 39191446 - 39191551
Alignment:
Q  310 atcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacg 409  Q
    |||||||||||||||||||||||||||||| ||||| || ||| ||||||||| |||||| ||| ||||||||||||||| ||| |||||| || |||||    
T  39191446 atcgtgtcacgattgttgaaaacgtgtcacaatttaaagtacaggatgaggtttattcgatattggttaaaacgtgtcacaatgtctatttcgtaacacg 39191545  T
Q  410 atttta 415  Q
    ||||||    
T  39191546 atttta 39191551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 328 - 416
Target Start/End: Complemental strand, 28788267 - 28788179
Alignment:
Q  328 aaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttag 416  Q
    ||||||||||||||||| || || | ||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  28788267 aaaacgtgtcacgatttggaacataggatgaggtttattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttag 28788179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 360 - 435
Target Start/End: Complemental strand, 21333540 - 21333465
Alignment:
Q  360 gttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttaggaagcatatcatagtggca 435  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||    
T  21333540 gttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaaacataccatagtggca 21333465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 14376717 - 14376638
Alignment:
Q  332 cgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgatt 412  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  14376717 cgtgtcacgatttgaagcacaggatgaggttcattcgacatt-gttaaaacgtgtcacgatggctatttcgtgacacgatt 14376638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 286
Target Start/End: Original strand, 7270240 - 7270310
Alignment:
Q  216 atgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagaaaaa 286  Q
    |||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7270240 atgatgacagtctgtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagaaaaa 7270310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 40916721 - 40916667
Alignment:
Q  361 ttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgatttta 415  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  40916721 ttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgatttta 40916667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 2836699 - 2836743
Alignment:
Q  236 cacatttttagagtctttttatgatatttttgagttcacaagcaa 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2836699 cacatttttagagtctttttatgatatttttgagttcacaagcaa 2836743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 26867846 - 26867929
Alignment:
Q  119 tttatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    |||||||||||||||||||| |||| |||||| ||||||||| ||||||||| |||||||| || |||| || || ||||||||    
T  26867846 tttatgaagtgaatttaaacttgttccaacaataatcactcatcaattcatggtttacacttaattaagcaaaaaacatcaaaa 26867929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 18031717 - 18031774
Alignment:
Q  224 agtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||| ||||||||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  18031717 agtccgtcattccatatttttagagtctttttatgatattttcgagttcaaaagcaag 18031774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 30065584 - 30065627
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  30065584 atttttagagtctttttatgatatttttgaattcacaagcaaga 30065627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 14017014 - 14016972
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  14017014 atttttagagtctttttatgataattttgagttcacaagcaag 14016972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 28788379 - 28788337
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  28788379 atttttagagtctttttatgatattttttagttcacaagcaag 28788337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 39191353 - 39191395
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  39191353 atttttagagtctttttatgatacttttgagttcacaagcaag 39191395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 4100413 - 4100372
Alignment:
Q  241 ttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  4100413 ttttagagtctttttatgatatttttgagttcacaggcaaga 4100372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 21336745 - 21336677
Alignment:
Q  214 caatgatggcagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaag 281  Q
    |||||||| ||||| |||||||   ||||||||||||||||| || |||||||||||||||||||||||    
T  21336745 caatgatgacagtcagtcattcactatttttagagtcttttttattatatttttgagttcacaagcaag 21336677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 179
Target Start/End: Complemental strand, 23595803 - 23595672
Alignment:
Q  50 attttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataa--atatttatgaagtgaatttaaacatgtttcaa 147  Q
    |||||| ||||||||||||||| ||| ||| |||||||||| ||| ||||||| ||||||| ||||  |||| ||| || ||||||||||| | |||  |    
T  23595803 attttctttcaaacttcacaaaaaacaacaacaattcaaaccccaacaacatacaaacatatataatcatatatatcaactgaatttaaacttttttgga 23595704  T
Q  148 caacaatcactcaccaattcatgatttacact 179  Q
     |  |||||||||| ||||||||  |||||||    
T  23595703 aattaatcactcacaaattcatggattacact 23595672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 21828041 - 21827976
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   ||||||||||||||||| ||||||||||||||||| ||||||||    
T  21828041 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcgcaagcaag 21827976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 446
Target Start/End: Complemental strand, 22937769 - 22937738
Alignment:
Q  415 aggaagcatatcatagtggcatatatttttga 446  Q
    ||||||||||||||||||||||||||||||||    
T  22937769 aggaagcatatcatagtggcatatatttttga 22937738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 17747639 - 17747673
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttca 273  Q
    ||||||||||||||||||||||| |||||||||||    
T  17747639 atttttagagtctttttatgataattttgagttca 17747673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 37279983 - 37280051
Alignment:
Q  50 attttcattcaaacttcaca---aacaaccacaccaattcaaactccatcaacatataaacataaataa 115  Q
    ||||||||||||||||||||   |||||| ||| |||||||||| ||| ||||||| ||||||| ||||    
T  37279983 attttcattcaaacttcacaaacaacaacaacaacaattcaaaccccaacaacatacaaacatatataa 37280051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 49499485 - 49499344
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||    
T  49499485 caagaaaaatagaagattttgaagaaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttggagcatatgatgaggttcattcgacattggtt 49499386  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  49499385 aaaacgtgtcacgatggctatttcgtgacacgattttaggaa 49499344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 2793382 - 2793521
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||| |||    
T  2793382 caagaaaaatagaagatttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatgaggttcattcgacattggtt 2793481  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  2793482 aaaacgtgtcacgatggctatttcgtgacacgattttagg 2793521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 1951262 - 1951121
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| | |||    
T  1951262 caagaaaaatagaagatttcaaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcataggatgaggttcattcgacagtggtt 1951163  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  1951162 aaaacgtgtcacgatggctatttcgtgacacgattttaggaa 1951121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 46 - 209
Target Start/End: Original strand, 20407759 - 20407922
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||| |||||| | ||||||||||| |||||||||||||||| |||||| ||||    
T  20407759 ctcaattttcattcaaacttcataaacaaccacaccaattcaaaccccattaacatacacacataaataaaaatttatgaagtgaattcaaacatatttc 20407858  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcactta 209  Q
    |||||||||||||||||||||||| ||||||| |||| |||  || ||||||||||| ||||||    
T  20407859 aacaacaatcactcaccaattcataatttacattcaattaatcaaaaatcatcaaaaccactta 20407922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 217 - 417
Target Start/End: Complemental strand, 29644308 - 29644086
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaa----------------------gaaaaatagaagat 294  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||                      |||||||||||||     
T  29644308 tgatgacagtctgtcattccacatttatagagtctttttatgatatttttgagttcacaagcaaacttaagcagcaaaaaaagcaagaaaaatagaagac 29644209  T
Q  295 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatgg 394  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |||||| ||||||||||||| | |||||||||| |||||||    
T  29644208 tttgaagaaagtaaaatcgtgtcacgattgttgaaaacgtatcacgatttggagcacaggatgagattcattcgacattggctaaaacgtgttacgatgg 29644109  T
Q  395 ctattttgtgacacgattttagg 417  Q
    |||||| |||||| |||||||||    
T  29644108 ctatttcgtgacatgattttagg 29644086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 289 - 424
Target Start/End: Complemental strand, 34733169 - 34733035
Alignment:
Q  289 gaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtca 388  Q
    ||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||| | ||||| ||||||    
T  34733169 gaagattttgaagaaagtaaaatcgtgacacgattgttgaaaacatgtcaggatttggagcacaggatgaggttcattcgacatt-ggtaaaatgtgtca 34733071  T
Q  389 cgatggctattttgtgacacgattttaggaagcata 424  Q
    |||||||||||| |||||| ||||||||||| ||||    
T  34733070 cgatggctatttcgtgacatgattttaggaaacata 34733035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 51 - 185
Target Start/End: Original strand, 21423179 - 21423313
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaa 150  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| ||| ||| |||||||||||| |||||||||||| |||    
T  21423179 ttttcattcaaacttcaaaaacaaccacaccaattcaaaccccatcaacacataaacataaacaaacattaatgaagtgaattcaaacatgtttcaccaa 21423278  T
Q  151 caatcactcaccaattcatgatttacactcaaata 185  Q
    |||||   ||||||||||||| || ||||||||||    
T  21423279 caatcttacaccaattcatgaatttcactcaaata 21423313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 310 - 417
Target Start/End: Original strand, 42021837 - 42021945
Alignment:
Q  310 atcgtgtcacgattgttgaaaac-gtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacac 408  Q
    ||||||||||||||  ||||||  |||||||||||| |||||   |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  42021837 atcgtgtcacgattactgaaaaatgtgtcacgatttggagcatcggatgaggttcattcgacattggttaaaacgtgttacgatggctatttcgtgacac 42021936  T
Q  409 gattttagg 417  Q
    |||||||||    
T  42021937 gattttagg 42021945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 22615107 - 22615209
Alignment:
Q  70 aacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcat 169  Q
    |||||||||| |||||| ||||||||||||||| ||||||          | |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  22615107 aacaaccacaacaattcgaactccatcaacatacaaacat----------tcatgaagtgaattcaaacatgtttcaacaacaatcactcgccaattcat 22615196  T
Q  170 gatttacactcaa 182  Q
    |||||||||||||    
T  22615197 gatttacactcaa 22615209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 202
Target Start/End: Complemental strand, 18622134 - 18621984
Alignment:
Q  50 attttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaaca 149  Q
    ||||| |||||||||||| ||||||||||||||||| ||||  ||| || | | || |||||| ||||||| ||||| |||||| || | ||||||||||    
T  18622134 atttttattcaaacttca-aaacaaccacaccaatttaaaccacattaatacacaaccataaacaaatattaatgaaatgaattcaa-cttgtttcaaca 18622037  T
Q  150 acaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    |||||||   ||||| ||||| |||||| ||||||||  || |||||||||||    
T  18622036 acaatcataaaccaaatcatggtttacattcaaataatcaaaaatcatcaaaa 18621984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 21719584 - 21719761
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaata----------aatat--ttatgaagtgaatttaaac 138  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||| ||||||  ||||||||| |          ||||   |||||||||| ||| || |    
T  21719584 ttttcattcaaacttcataaacaactacaccaattcaaaccccaacaacattcaaacataaaaataaaaaataaaataaaattatgaagtgcattcaatc 21719683  T
Q  139 atgtttcaacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
     ||||||||||||||| |||||||| |||||||||||||||||| |||  || ||||| |||||  ||||| ||||||    
T  21719684 gtgtttcaacaacaattactcaccatttcatgatttacactcaattaatcaaaaatcaccaaaacaacttatcaacaa 21719761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 2404722 - 2404787
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||| ||||| |||||||   ||||||||||||||||||| ||||||||||||||||||||||||    
T  2404722 tgatgacagtcagtcattcgctatttttagagtctttttataatatttttgagttcacaagcaaga 2404787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 27537191 - 27537149
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||| ||||||||||||||| |||||||||||||||||||    
T  27537191 atttttatagtctttttatgataattttgagttcacaagcaag 27537149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 45961685 - 45961643
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||||| |||||||| |||||||||||||||||||    
T  45961685 atttttagagtcttgttatgataattttgagttcacaagcaag 45961643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 41059234 - 41059169
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   ||||||||||||||||| ||||||||||||||||| ||||||||    
T  41059234 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcgcaagcaag 41059169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 7634991 - 7635057
Alignment:
Q  308 aaatcgtgtcacgattgttgaaaa-cgtgtcacgatttagagcacatgatgaggttcattcgacatt 373  Q
    |||||||| |||| ||| |||||| || ||||||||||||||||||  ||||||| |||||||||||    
T  7634991 aaatcgtgacacggttgctgaaaaacgcgtcacgatttagagcacagaatgaggtgcattcgacatt 7635057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 42021743 - 42021785
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||||||||||||||| |||||  ||||||||||||||||    
T  42021743 atttttagagtctttttataatattactgagttcacaagcaag 42021785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 21019367 - 21019304
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   |||||||||||||||| ||||||||||||||||| ||| ||||    
T  21019367 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcgcaaccaag 21019304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 25595602 - 25595460
Alignment:
Q  278 caagaaaaatagaagatttt-gaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagt 376  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  25595602 caagaaaaatagaagatttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcacatgatgaggttcattcgacattggt 25595503  T
Q  377 taaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  25595502 taaaacgtgtcacgatgactatttcgtgacacgattttaggaa 25595460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 33878155 - 33878014
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  |||||||| |||||||||| |||    
T  33878155 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacaatttagaacacagaatgaggtttattcgacattggtt 33878056  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  33878055 aaaacgtgtcacgatggctatttcgtgacacgattttaggaa 33878014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 275 - 419
Target Start/End: Original strand, 10663091 - 10663235
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||| ||||||||     
T  10663091 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacatgtcatgatttggagcacataatgaggttcaatcgacattg 10663190  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  10663191 gttaaaacgtgtcacgatggatatttcgtgacacgattttaggaa 10663235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 275 - 419
Target Start/End: Complemental strand, 45156838 - 45156694
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||     
T  45156838 aagcaagaaaaatagaagattttgaagaaagcacaatcgtgtcacgattgttgaaaatgtgtcacgatttggagcacaggatgaggttcattcgacattg 45156739  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
     |||||||||||||| |||||||||| ||||||||||||||||||    
T  45156738 attaaaacgtgtcacaatggctatttcgtgacacgattttaggaa 45156694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 275 - 417
Target Start/End: Complemental strand, 43682717 - 43682575
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||| ||||||||||||||||||||     
T  43682717 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattattgaaaacgtgtcacaatttggaacacaggatgaggttcattcgacattg 43682618  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  43682617 gttaaaacgtgtcacgacggctatttcgtgacacgattttagg 43682575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 217 - 419
Target Start/End: Complemental strand, 5540995 - 5540771
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag----------------------aaaaatagaagat 294  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||    
T  5540995 tgatgacagtttgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcataagcagcaagacaagtaagaaaaatagaagat 5540896  T
Q  295 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatgg 394  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||| |||||||||||||||||||     
T  5540895 tttgaaggaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttgaagcacaggatgaggttcattcgacattggttaaaacgtgtcacgatga 5540796  T
Q  395 ctattttgtgacacgattttaggaa 419  Q
    |||||| |||||| |||||||||||    
T  5540795 ctatttcgtgacatgattttaggaa 5540771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 25592417 - 25592275
Alignment:
Q  278 caagaaaaatagaagatttt-gaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagt 376  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||    
T  25592417 caagaaaaatagaagatttttgaagaaagcaaaatcgtgtcacgattgttgaaaatgtgtcccgatttggagcacatgatgaggttcattcgacattggt 25592318  T
Q  377 taaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||| |||||| |||||| ||||||||||||||||||    
T  25592317 taaaacgtgttacgatgactatttcgtgacacgattttaggaa 25592275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 18722227 - 18722086
Alignment:
Q  278 caagaaaaatagaagatttt-gaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagt 376  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||  ||    
T  18722227 caagaaaaatagaagatttttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttggagcaca-gatgaggttcattcgatatcggt 18722129  T
Q  377 taaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  18722128 taaaacgtgtcacgatgactatttcgtgacacgattttaggaa 18722086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 25228097 - 25228234
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  25228097 caagaaaaatagaagattttgaagaaa--aaaatcgtgtctcgattgctgaaaacgtgtcacgatttggagcacatgatgaggttcattcgacattggtt 25228194  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||||||||| ||||||| ||||| ||||||||||||||||    
T  25228195 aaaacgtgttacgatggttatttcgtgacacgattttagg 25228234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 275 - 399
Target Start/End: Original strand, 14420944 - 14421068
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||||| || |||||     
T  14420944 aagcaagaaaaatataagattttgaagaaagcaaaatcgtatcacgattgttgaaaacgtgtcacgatttggaacacaggatgaggttcactcaacattg 14421043  T
Q  375 gttaaaacgtgtcacgatggctatt 399  Q
    | ||||||||| |||||| ||||||    
T  14421044 gctaaaacgtgacacgatagctatt 14421068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 21695001 - 21695155
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||| ||||||||||| || ||   || || ||||||||||||||||||||||||||||    
T  21695001 ctcatttttcattcaa-cttcacaa-caaccacaccaattcaaaccccatcaacatacaatcaggtattaacatttatgaagtgaatttaaacatgtttc 21695098  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    ||||| ||||||||| ||||| |||||||||||| ||||||| || |||||||||||    
T  21695099 aacaataatcactcatcaattgatgatttacacttaaataagtaaaaatcatcaaaa 21695155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 310 - 419
Target Start/End: Complemental strand, 17895403 - 17895293
Alignment:
Q  310 atcgtgtcacgattgttgaaaa-cgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacac 408  Q
    ||||||||||||||  |||||| |||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  17895403 atcgtgtcacgattactgaaaaacgtgtcacgatttgaagcacatgatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacac 17895304  T
Q  409 gattttaggaa 419  Q
    |||||||||||    
T  17895303 gattttaggaa 17895293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 322 - 416
Target Start/End: Original strand, 20520079 - 20520173
Alignment:
Q  322 ttgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttag 416  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||    
T  20520079 ttgttgaaaacgtgtcacgatttggaacacaggatgaggttcattcgacattggttaaaacgtgtcacaatggctatttcgtgacacgattttag 20520173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 56 - 217
Target Start/End: Complemental strand, 18830876 - 18830718
Alignment:
Q  56 attcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaatc 155  Q
    |||||| ||||| |||||||| |||||||||| || ||| ||||||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||    
T  18830876 attcaatcttca-aaacaacctcaccaattcatac-ccaacaacatataaacataaacaaacatctatgaagtgaattcaaacatgtttcaacaacaatc 18830779  T
Q  156 actcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaat 217  Q
    |  || ||||||||||||| || |||||||  ||| |||||||||||  ||| |||||||||    
T  18830778 atacatcaattcatgattt-cagtcaaatagtaaaaaatcatcaaaacaactcaacaacaat 18830718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 50 - 202
Target Start/End: Original strand, 25263182 - 25263335
Alignment:
Q  50 attttcattcaaacttcacaaacaaccacaccaattcaaactcc-atcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaac 148  Q
    ||||| ||||||||||||||||||||||||||| ||||||| || | ||||||| ||||||| ||||  |||||||||||||||||||||||||| ||||    
T  25263182 atttttattcaaacttcacaaacaaccacaccacttcaaacccccaacaacatacaaacatatataatcatttatgaagtgaatttaaacatgttccaac 25263281  T
Q  149 aacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    || ||||||||| || || | | |||||||| || |||| || ||||| |||||    
T  25263282 aataatcactcatcatttaagggtttacacttaattaagcaaaaatcaccaaaa 25263335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 5981220 - 5981156
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5981220 tgatgacagtccgtcatttcacatttttagagtctttttatgatatttttgagttcacaagcaag 5981156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 14420864 - 14420928
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14420864 tgatgacagtctctcattccacatttttagagtctttttatgatattttttagttcacaagcaag 14420928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 310 - 415
Target Start/End: Original strand, 30640624 - 30640729
Alignment:
Q  310 atcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacg 409  Q
    ||||||||||||||||||||||||||||||  ||| || |||| ||||| |||| ||||  ||| |||||||||||| ||||||  ||||| ||||| ||    
T  30640624 atcgtgtcacgattgttgaaaacgtgtcacactttggatcacaagatgaagttctttcggtattggttaaaacgtgtaacgatgtgtatttcgtgacgcg 30640723  T
Q  410 atttta 415  Q
    ||||||    
T  30640724 atttta 30640729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 45156923 - 45156854
Alignment:
Q  212 aacaatgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||| ||||| |||| | |||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  45156923 aacactgatgacagtttatcattctatatttttagagtctttttatgatatttttgagttcacaagcaag 45156854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 12582240 - 12582283
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12582240 atttttagagtctttttatgatatttttgagttcacaagcaaga 12582283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 23612745 - 23612803
Alignment:
Q  361 ttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||||||  |||||||||||||| |||||||||| ||||||||||||||||||    
T  23612745 ttcattcgacattgtttaaaacgtgtcacaatggctatttcgtgacacgattttaggaa 23612803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 18826812 - 18826771
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaa 280  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  18826812 atttttagagtctttttatgataattttgagttcacaagcaa 18826771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 17622496 - 17622412
Alignment:
Q  69 aaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaa 153  Q
    |||||||| ||||||||| || | |||||||||| |||||| || ||  ||| ||| |||||||| |||||||||||||||||||    
T  17622496 aaacaaccccaccaattctaaattcatcaacatacaaacatcaacaatcattaatggagtgaattcaaacatgtttcaacaacaa 17622412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 25228016 - 25228078
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| ||||||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  25228016 tgatgacagtctg-cattgcacaattttagagtctttt-atgatatttttgagttcacaagcaag 25228078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 19792948 - 19792990
Alignment:
Q  239 atttttagagtctttt-tatgatatttttgagttcacaagcaa 280  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  19792948 atttttagagtcttttttatgatatttttgagttcacaagcaa 19792990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 217 - 419
Target Start/End: Original strand, 9953036 - 9953260
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaa----------------------gaaaaatagaagat 294  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||    
T  9953036 tgatgacagtctgtcatttcacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 9953135  T
Q  295 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatgg 394  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||| |    
T  9953136 tttgaagaaagcaaaatcatgtcacgattgttgaaaacgtgtcacgatttggagcacagaatgaggttcattcgacattggttaaaacgtgtcacgatag 9953235  T
Q  395 ctattttgtgacacgattttaggaa 419  Q
    |||||| ||||||||||||||||||    
T  9953236 ctatttcgtgacacgattttaggaa 9953260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 275 - 419
Target Start/End: Complemental strand, 5739109 - 5738965
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| | ||||||||||||||||||||     
T  5739109 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttaaaaacatgtcacgatttggagcaaaggatgaggttcattcgacattg 5739010  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||    
T  5739009 gttaaaacgcgtcacgatggctatttcgtgacacgattttaggaa 5738965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 23299570 - 23299698
Alignment:
Q  53 ttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaaca 152  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  23299570 ttcattcaaacttcaaaaacaaccacaccaattcaaactccatcaacatacaaacataaataaacatttatgaagtgaatttaaacatgtttcaacaata 23299669  T
Q  153 atcactcaccaattcatgatttacactca 181  Q
    |||||||| ||||||||||||||||||||    
T  23299670 atcactcatcaattcatgatttacactca 23299698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 23379731 - 23379589
Alignment:
Q  278 caagaaaaatagaagatttt-gaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagt 376  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||  |    
T  23379731 caagaaaaatagaagatttttgaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttggagcacatgatgaggttcactcgacattgat 23379632  T
Q  377 taaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||    
T  23379631 taaaacgtgtcacgatagctatttcgtgacacgattctaggaa 23379589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 23389070 - 23388928
Alignment:
Q  278 caagaaaaatagaagatttt-gaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagt 376  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||  |    
T  23389070 caagaaaaatagaagatttttgaagaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttggagcacatgatgaggttcactcgacattgat 23388971  T
Q  377 taaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||    
T  23388970 taaaacgtgtcacgatagctatttcgtgacacgattctaggaa 23388928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 2371496 - 2371635
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||  ||||||||||||| || ||||||||||||||||| |||    
T  2371496 caagaaaaatagaagattttgaagaaagcaaaatcgtatcacgattgttgaaaatgtatcgagatttagagcacaggacgaggttcattcgacattggtt 2371595  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  2371596 aaaacgtgtcatgatggctatttcgtgacacgattttagg 2371635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 34501497 - 34501636
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |    
T  34501497 caagaaaaaaagaagattttgatgaaagcaaaattgtgtcacgattgttgaaaacgtgtcacgatttggagcataggatgaggttcattcgacattagct 34501596  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    |||||||||||||||||||||||  |||||| ||||||||    
T  34501597 aaaacgtgtcacgatggctatttcatgacacaattttagg 34501636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 14354205 - 14354375
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||| ||||| |||||| ||||||||| |||||||||||    
T  14354205 ctcaattttcattcaaacttcacaaacaaccacacaaattcaaaccccatcaacagacaaacatatataaacatttataaagtgaattcaaacatgtttc 14354304  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||||| |||||||||  |||||||||||||||||||| |||  || |||||||||||  ||||| ||||||    
T  14354305 aacaagaatcactcattaattcatgatttacactcaattaatcaaaaatcatcaaaacaacttatcaacaa 14354375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 58 - 216
Target Start/End: Complemental strand, 19725584 - 19725427
Alignment:
Q  58 tcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaatcac 157  Q
    |||||||||| |||||||||||||||||||| ||| |  |||||| ||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||     
T  19725584 tcaaacttcataaacaaccacaccaattcaatctc-acgaacatacaaacataaacaaacattaatgaagtgaattcaaacatgtttcaacaacaatcaa 19725486  T
Q  158 tcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    |||||||||||||||||||| |||||||   || |||||||||||| ||| ||||||||    
T  19725485 tcaccaattcatgatttacagtcaaatagtcaaaaatcatcaaaataactcaacaacaa 19725427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 12487657 - 12487806
Alignment:
Q  53 ttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaaca 152  Q
    |||||||||||||||||||||||| |||||||||||| | |||||||||| ||||||  ||||| ||||||| ||||||||||||||| ||||||||| |    
T  12487657 ttcattcaaacttcacaaacaacctcaccaattcaaaattcatcaacatacaaacatgtataaacatttatgtagtgaatttaaacatatttcaacaata 12487756  T
Q  153 atcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    |||||||| ||||||||  || ||||| ||||||| || |||||||||||    
T  12487757 atcactcatcaattcatagttcacacttaaataagcaaaaatcatcaaaa 12487806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 51 - 178
Target Start/End: Complemental strand, 19977521 - 19977394
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaa 150  Q
    |||||||||||| |||| |||||||||||  ||||||||| |||| |||||| |||| |  ||||| |||||||||||||||||||||||||||||||||    
T  19977521 ttttcattcaaaattcataaacaaccacagtaattcaaaccccattaacatacaaacgtgtataaaaatttatgaagtgaatttaaacatgtttcaacaa 19977422  T
Q  151 caatcactcaccaattcatgatttacac 178  Q
    |||| |||||||||||||||| ||||||    
T  19977421 caatgactcaccaattcatgacttacac 19977394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 10974805 - 10974974
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| ||||||||| ||||||| ||||||||||| ||| |||||| ||||||||| ||||||||||| ||| ||| |||||||||||| ||||| |||||    
T  10974805 ctcatttttcattccaacttca-aaacaaccacatcaactcaaaccccatcaacacataaacataaacaaacattaatgaagtgaattcaaacaagtttc 10974903  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||||| |||||  || |||||||||| || ||||||||||| ||| |||||| ||||  ||| ||||||||    
T  10974904 aacaagaatcatacatcaattcatgaatttcactcaaataataaaaaatcattaaaacaactcaacaacaa 10974974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 50 - 202
Target Start/End: Complemental strand, 12463888 - 12463736
Alignment:
Q  50 attttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaaca 149  Q
    ||||||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||  | ||  |||||||||||| ||||||||||||| ||| |    
T  12463888 attttcattcaaacttcacaaaccaccacaccaattcaacatccatcaacatacaaacatgtaaaataatttatgaagtgcatttaaacatgttccaaga 12463789  T
Q  150 acaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    | ||||| ||| ||||||||| |||||||| |||| || || ||||| |||||    
T  12463788 ataatcattcatcaattcatggtttacacttaaatgagcaaaaatcaccaaaa 12463736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 23294479 - 23294328
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaa 150  Q
    |||||||||||||||||||||||| ||||| ||||||||  | ||||||||| ||||||   |||| || |||||||||||||||||||| ||| |||||    
T  23294479 ttttcattcaaacttcacaaacaatcacactaattcaaaaccaatcaacatacaaacatgtgtaaacatctatgaagtgaatttaaacatattttaacaa 23294380  T
Q  151 caatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
     ||||||| | |||||||| ||||| |||||||||||  | |||||||||||    
T  23294379 taatcacttatcaattcataatttagactcaaataagctaaaatcatcaaaa 23294328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 46 - 216
Target Start/End: Complemental strand, 14566767 - 14566610
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| | ||||||||| |||              ||| |||||||||||    
T  14566767 ctcatttttcattcaaacttcataaacaaccacaccaattcaaactccattaacacacaaacataaacaaa-------------cattcaaacatgtttc 14566681  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    | ||||||||||||| ||||||||||||||||||||| |||  || | || ||||||| ||||||||||||    
T  14566680 atcaacaatcactcatcaattcatgatttacactcaattaatcaaaagtcttcaaaataacttaacaacaa 14566610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 28666176 - 28666112
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  28666176 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaagcaag 28666112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 10289208 - 10289251
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10289208 atttttagagtctttttatgatatttttgagttcacaagcaaga 10289251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 19980203 - 19980277
Alignment:
Q  108 ataaataaatatttatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcatgatttacactcaa 182  Q
    ||||| ||| ||| |||| ||||||| |||||| ||||||||||||||| |||||||||||||||| ||||||||    
T  19980203 ataaacaaacattaatgatgtgaattcaaacatatttcaacaacaatcaatcaccaattcatgattcacactcaa 19980277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 19980124 - 19980203
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatga 125  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||  |||| |||||| ||||||||| ||| ||| ||||    
T  19980124 ctcatttttcattcaaacttcaaaaacaaccgcaccaattcaaatcccataaacatacaaacataaacaaacattaatga 19980203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 23350239 - 23350322
Alignment:
Q  119 tttatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    |||||||||||||||| ||||||||||||||| ||||||||| || |||||| |  |||||  |||||| || |||||||||||    
T  23350239 tttatgaagtgaatttgaacatgtttcaacaataatcactcatcatttcatgttacacacttgaataagcaaaaatcatcaaaa 23350322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 20181295 - 20181337
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  20181295 atttttagagtccttttgtgatatttttgagttcacaagcaag 20181337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 22154696 - 22154654
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  22154696 atttttagagtccttttgtgatatttttgagttcacaagcaag 22154654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 13004643 - 13004611
Alignment:
Q  312 cgtgtcacgattgttgaaaacgtgtcacgattt 344  Q
    |||||||||||||||||||||||||||||||||    
T  13004643 cgtgtcacgattgttgaaaacgtgtcacgattt 13004611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 16896605 - 16896664
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacata 110  Q
    ||||||||||||||||| ||||||||| |||||||||||  || |||||| | |||||||    
T  16896605 ttttcattcaaacttcataaacaaccaaaccaattcaaatcccttcaacaaacaaacata 16896664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 22545767 - 22545830
Alignment:
Q  52 tttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataa 115  Q
    |||||| ||||||||||||||||| ||| |||||||||| |||  |||||| ||||||| ||||    
T  22545767 tttcatccaaacttcacaaacaacaacaacaattcaaaccccaataacatacaaacatatataa 22545830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 23349688 - 23349748
Alignment:
Q  47 tcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacat 109  Q
    ||||||||||||||||  |||  ||||||||||||||||||||| ||| ||||||| ||||||    
T  23349688 tcaattttcattcaaaactca--aacaaccacaccaattcaaaccccaacaacatacaaacat 23349748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 281
Target Start/End: Original strand, 13004434 - 13004464
Alignment:
Q  251 tttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||||||||||||||||||||||    
T  13004434 tttttatgatatttttgagttcacaagcaag 13004464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 304
Target Start/End: Original strand, 13004480 - 13004509
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaa 304  Q
    ||||||||||||||||||||||||||||||    
T  13004480 aagcaagaaaaatagaagattttgaagaaa 13004509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 275 - 419
Target Start/End: Complemental strand, 25139960 - 25139816
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||||    
T  25139960 aagcaagaaaaatagaagatttcgaagaaagcaaaatcgtgtcacgattgttgacaacgtgtcacgatttggagcacaagatgaggttcattagacatta 25139861  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||    
T  25139860 gttaaaacgtgtcacaatggctatttcgtgacacgattttaggaa 25139816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 36809352 - 36809211
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| |||    
T  36809352 caagaaaaatagaagattttgaggaaagcaaatttgtgtcacgattgttgaaaacgtgtcacgatttggagcacaggatgagattcattcgacattggtt 36809253  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36809252 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 36809211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 275 - 419
Target Start/End: Complemental strand, 38006206 - 38006062
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||     
T  38006206 aagcaagagaaatagaagattttgaagaaagcaaaatcgtgtgacgattgtcgaaaacgtgtcacgatttggagcacaggatgaggttcattcgacattg 38006107  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||||||||||||||||||| |||||||||||| |||||    
T  38006106 gttaaaacgtgtcacgatggctatttcgtgacacgatttcaggaa 38006062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 26358755 - 26358894
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |||| |||    
T  26358755 caagaaaaatagaagatttcgaagaaagcaaaatcgtgtcacgattgttgaaaacgtggcacgatttggagcacaggatgaggttcattcggcattggtt 26358854  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    ||| ||||||||||||||||||| ||||||||||||||||    
T  26358855 aaatcgtgtcacgatggctatttcgtgacacgattttagg 26358894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 278 - 419
Target Start/End: Original strand, 25873286 - 25873427
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||||||||| |||    
T  25873286 caagagaaatagaagattttgaagaaagaaaaatcgtgtcacgattgtcgaaaacgtgtcatgatttggagcacaggatgaggttcattcgacattggtt 25873385  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||| ||||||||||||||||||| ||||||||||||||||||    
T  25873386 aaaccgtgtcacgatggctatttcgtgacacgattttaggaa 25873427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 278 - 419
Target Start/End: Complemental strand, 25821835 - 25821693
Alignment:
Q  278 caagaaaaatagaagatttt-gaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagt 376  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| || |||| |||||||||||||||||||| ||    
T  25821835 caagaaaaatagaagatttttgaagaaagcaaaatcgtgtcaagattgttgaaaaggtgtcacgatttggaacacaggatgaggttcattcgacattggt 25821736  T
Q  377 taaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  25821735 taaaatgtgtcacgatggctatttcgtgacacgattttaggaa 25821693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 278 - 419
Target Start/End: Original strand, 25869918 - 25870059
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||  ||    
T  25869918 caagagaaatagaagattttgaagaaagaaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttggagcacaggatgaagttcattcgacattgatt 25870017  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  25870018 aaaacgtgtcacgatggctatttcgtgatacgattttaggaa 25870059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 275 - 416
Target Start/End: Original strand, 16788468 - 16788609
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacatta 374  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||  ||| |||||| |||     
T  16788468 aagcaagaaaaatataagattttgatgaaagcacaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcgcaggatggagtttattcgatattg 16788567  T
Q  375 gttaaaacgtgtcacgatggctattttgtgacacgattttag 416  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  16788568 gttaaaacgtgtcacgatggctatttcgtgacacgattttag 16788609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 278 - 415
Target Start/End: Complemental strand, 30275608 - 30275472
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||  | ||||| |||||||||||||| |||    
T  30275608 caagaaaaatagaagattttgaggaaagcaaattcgtgtcacgattgttgaaaacgtgtcacgatttggagcgtaggatga-gttcattcgacattggtt 30275510  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgatttta 415  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  30275509 aaaacgtgtcacgatggttatttcgtgacacgatttta 30275472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 21654118 - 21654278
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| ||||||          | |||||||||||| |||||||||||    
T  21654118 ctcaattttcattcaaatttcacaaacaaccacaccaatttaaaccccatcaacataaaaacat----------tcatgaagtgaattcaaacatgtttc 21654207  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||||||||||||||||||||||||||||||||||||| |||  || |||||||||||  ||||||||||||    
T  21654208 aacaacaatcactcaccaattcatgatttacactcaattaatcaaaaatcatcaaaacaacttaacaacaa 21654278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 18995145 - 18995283
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||| ||| ||| |||||||||||| |||||||||||    
T  18995145 ctcatttttcattcaaacctcaaaaacaaccacaccaattcaaactccatca-cacataaacataaacaaacattaatgaagtgaattcaaacatgtttc 18995243  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaata 185  Q
    |||||||||||  ||||||||||||| || |||| |||||    
T  18995244 aacaacaatcatacaccaattcatgaatttcacttaaata 18995283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 10600096 - 10600187
Alignment:
Q  328 aaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||| || || | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  10600096 aaaacgtgtcacgatttggaacataggatgaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaa 10600187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 28774139 - 28774284
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| ||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||  ||          |||||||||| |||||||||||    
T  28774139 ctcatttttcattcaaacttca-acacaaccacaccaattcaaaccccatcaacatacaaacatccat----------gaagtgaattcaaacatgtttc 28774227  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    |||||||||||| || ||||||||||||||||||||| ||   || |||||||||||    
T  28774228 aacaacaatcacacatcaattcatgatttacactcaactagtcaaaaatcatcaaaa 28774284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 29439712 - 29439797
Alignment:
Q  332 cgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    |||||||||||||  |||||| ||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||    
T  29439712 cgtgtcacgatttgaagcacaggatgaagttcattcgatattggttaaaacgtgtcacgatggctatttcgtgacacgattttagg 29439797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 25140041 - 25139980
Alignment:
Q  216 atgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaag 277  Q
    |||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  25140041 atgatgacagtcagtcattccacaattttagagtttttttatgatatttttgagttcacaag 25139980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 43722926 - 43722969
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43722926 atttttagagtctttttatgatatttttgagttcacaagcaaga 43722969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 5665852 - 5665894
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5665852 atttttagagtctttttatgatatttttgagttcacaagcaag 5665894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 10599950 - 10600015
Alignment:
Q  216 atgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||| ||||| |||||||   ||||||||| |||||||||||||||||||||||||||||||||    
T  10599950 atgatgacagtcagtcattcactatttttagaatctttttatgatatttttgagttcacaagcaag 10600015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 15466253 - 15466298
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 323  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  15466253 caagagaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 15466298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 13972791 - 13972748
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  13972791 atttttagagtctttttatgatatttttgagttcacaaacaaga 13972748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 5104974 - 5105016
Alignment:
Q  240 tttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  5104974 tttttagagtttttttatgatatttttgagttcacaagcaaga 5105016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 31430616 - 31430574
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  31430616 atttttagagtctttttatgataattttgagttcacaagcaag 31430574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 38014658 - 38014700
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  38014658 atttttagagtctttttatgataattttgagttcacaagcaag 38014700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 3874482 - 3874547
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||| ||||| |||||||   |||||||||||||||||| ||||||||||||||||||| |||||    
T  3874482 tgatgacagtcagtcattcattatttttagagtctttttaggatatttttgagttcacaaacaaga 3874547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 29439678 - 29439723
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 323  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  29439678 caagaaaaaaagaagatttcgaagaaagcaaaatcgtgtcacgatt 29439723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 6825999 - 6826039
Alignment:
Q  242 tttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  6825999 tttaaagtctttttatgatatttttgagttcacaagcaaga 6826039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 13136784 - 13136827
Alignment:
Q  239 atttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    |||||||||||| ||||||||||||||||||||||||| |||||    
T  13136784 atttttagagtcattttatgatatttttgagttcacaaacaaga 13136827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 446
Target Start/End: Complemental strand, 25139752 - 25139723
Alignment:
Q  417 gaagcatatcatagtggcatatatttttga 446  Q
    ||||||||||||||||||||||||||||||    
T  25139752 gaagcatatcatagtggcatatatttttga 25139723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 419
Target Start/End: Original strand, 30925934 - 30925975
Alignment:
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    |||||||||||||||||||| || |||||||||||| |||||    
T  30925934 aaaacgtgtcacgatggctaattcgtgacacgatttcaggaa 30925975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 278 - 419
Target Start/End: Original strand, 61680 - 61821
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||  | |||| |||||||||||||||||||| |||    
T  61680 caagagaaatagaagattttaaagaaagcaaaatcgtgtcacgattgtcgaaaacgtgtcacgatttgaaacacaagatgaggttcattcgacattggtt 61779  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  61780 aaaacgtgtcacgatggctatttcgtgacacgattttaggaa 61821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 291046 - 291185
Alignment:
Q  278 caagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagtt 377  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |||    
T  291046 caagaaaaatagaagattttgaggaaagcaaatttgtgtcacgattgttgaaaacgtgtcacgatttggagcacaggataaggttcattcgacattggtt 291145  T
Q  378 aaaacgtgtcacgatggctattttgtgacacgattttagg 417  Q
    |||||||||||||||| |||||| || |||||||||||||    
T  291146 aaaacgtgtcacgatgactatttcgtaacacgattttagg 291185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 246342 - 246286
Alignment:
Q  225 gtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  246342 gtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 246286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 246270 - 246232
Alignment:
Q  275 aagcaagaaaaatagaagattttgaagaaagcaaaatcg 313  Q
    |||||||||||||||||||||||||||||||||||||||    
T  246270 aagcaagaaaaatagaagattttgaagaaagcaaaatcg 246232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 53 - 216
Target Start/End: Original strand, 1623 - 1786
Alignment:
Q  53 ttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaaca 152  Q
    ||||||||||||||| |||||||||||||||||||||  |||| |||||| ||||| | | ||| |||||||||||||||||||||| ||||||||||||    
T  1623 ttcattcaaacttcataaacaaccacaccaattcaaatcccataaacatacaaacacatacaaacatttatgaagtgaatttaaacaagtttcaacaaca 1722  T
Q  153 atcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||||||||| ||||||| | |||||||||| ||| ||| |||||||||||| ||||||||||||    
T  1723 atcactcacaaattcataacttacactcaattaataaaaaatcatcaaaataacttaacaacaa 1786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 30453 - 30300
Alignment:
Q  49 aattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaac 148  Q
    ||||||||| ||||||||||| | |||||||||||||||||| ||| |||||||  |||||| ||||  |||||||||||||||||||||||||| | ||    
T  30453 aattttcatccaaacttcacataaaaccacaccaattcaaaccccaacaacataccaacatatataatcatttatgaagtgaatttaaacatgttccgac 30354  T
Q  149 aacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    |||||||||||| |||||||||||||||||| ||||||| || |||||||||||    
T  30353 aacaatcactcatcaattcatgatttacacttaaataagcaaaaatcatcaaaa 30300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 2438 - 2568
Alignment:
Q  54 tcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaa 153  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||||| ||||||||||||||| |||    
T  2438 tcattcaaacttca-aaacaaccacaccaattcaaaatccatcaacatataaacataaatagacattaatgaagtgaattcaaacatgtttcaacaccaa 2536  T
Q  154 tcactcaccaattcatgatttacactcaaata 185  Q
    |||  || |||||||||| || ||||||||||    
T  2537 tcatacaacaattcatgaatttcactcaaata 2568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 7282 - 7147
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||  || ||| |||||||||||| |||||||||||    
T  7282 ctcatttttcattcaaacttcaaaaacaaccacaccaattcaaaccccatcaacacataaacataaaccaacattaatgaagtgaattcaaacatgtttc 7183  T
Q  146 aacaacaatcactcaccaattcatgatttacactca 181  Q
    |||||||||||  ||| ||||| ||| || ||||||    
T  7182 aacaacaatcatacactaattcgtgaatttcactca 7147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 14864 - 14729
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||  || ||| |||||||||||| |||||||||||    
T  14864 ctcatttttcattcaaacttcaaaaacaaccacaccaattcaaaccccatcaacacataaacataaaccaacattaatgaagtgaattcaaacatgtttc 14765  T
Q  146 aacaacaatcactcaccaattcatgatttacactca 181  Q
    |||||||||||  ||| ||||| ||| || ||||||    
T  14764 aacaacaatcatacactaattcgtgaatttcactca 14729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 24816 - 24681
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||  || ||| |||||||||||| |||||||||||    
T  24816 ctcatttttcattcaaacttcaaaaacaaccacaccaattcaaaccccatcaacacataaacataaaccaacattaatgaagtgaattcaaacatgtttc 24717  T
Q  146 aacaacaatcactcaccaattcatgatttacactca 181  Q
    |||||||||||  ||| ||||| ||| || ||||||    
T  24716 aacaacaatcatacactaattcgtgaatttcactca 24681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 217 - 417
Target Start/End: Original strand, 197242 - 197453
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagca----------------------agaaaaatagaagat 294  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||    
T  197242 tgatgacagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcataagcagcaagaaaagcaagaaaaatagaagat 197341  T
Q  295 tttgaagaaagcaaaatcgtgtcacgattgttgaaaacgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatgg 394  Q
    ||||||||||| |||||           ||||||||||||||||||||||  |||||| ||||||||||||||||||||  |||||| ||||||||||||    
T  197342 tttgaagaaagtaaaat-----------tgttgaaaacgtgtcacgatttgaagcacaggatgaggttcattcgacattgattaaaatgtgtcacgatgg 197430  T
Q  395 ctattttgtgacacgattttagg 417  Q
    ||||||  |||||||||||||||    
T  197431 ctatttcatgacacgattttagg 197453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 154898 - 155068
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    |||| ||||||||||||||||| |||||| |||||| ||| ||||  ||| |||||| ||||||  ||||| ||||||||||||||||||||||||||||    
T  154898 ctcatttttcattcaaacttcaaaaacaatcacaccgatttaaacctcattaacatacaaacatgtataaacatttatgaagtgaatttaaacatgtttc 154997  T
Q  146 aacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
    ||| | ||||||||| ||||||||| || |||||  ||| || || |||||||||||  ||||| ||||||    
T  154998 aaccataatcactcatcaattcatggttcacacttgaatgagcaaaaatcatcaaaacaacttatcaacaa 155068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 3522 - 3651
Alignment:
Q  50 attttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaaca 149  Q
    ||||||||||||||||||||||| | ||||||||||||||| ||| ||||||| || |||| ||||  ||||||||||||||||| |||||||| |||||    
T  3522 attttcattcaaacttcacaaaccagcacaccaattcaaaccccaacaacatacaagcatatataatcatttatgaagtgaatttgaacatgttccaaca 3621  T
Q  150 acaatcactcaccaattcatgatttacact 179  Q
    | ||||||||| |||||||||  |||||||    
T  3622 ataatcactcatcaattcatggattacact 3651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 5313 - 5428
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaa 150  Q
    |||||||||||||||||||||||| |||||||||| || ||| || |||||||||| ||||||||| |||||||||||||||||||| |||| |||||||    
T  5313 ttttcattcaaacttcacaaacaatcacaccaatttaatctc-atgaacatataaatataaataaacatttatgaagtgaatttaaatatgtgtcaacaa 5411  T
Q  151 caatcactcaccaattc 167  Q
     ||||||||| ||||||    
T  5412 taatcactcatcaattc 5428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 10052 - 10187
Alignment:
Q  54 tcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgt-----ttcaac 148  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||||||     || |||    
T  10052 tcattcaaacttca-aaacaactacaccaattcaaaatccatcaacatataaacataaataaacattaatgaagtgaattcaaacatgtttaagtttaac 10150  T
Q  149 aacaatcactcaccaattcatgatttacactcaaata 185  Q
    ||||||||  ||||||||||||| || ||||||||||    
T  10151 aacaatcatacaccaattcatgaatttcactcaaata 10187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 54 - 219
Target Start/End: Original strand, 3137 - 3301
Alignment:
Q  54 tcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaa 153  Q
    |||||||||||| | ||||||||||||||| |||||  ||||||||| ||||||||||||||| ||| |||||||||||| ||| |||||||||||| ||    
T  3137 tcattcaaacttaa-aaacaaccacaccaactcaaaacccatcaacacataaacataaataaacattaatgaagtgaattcaaatatgtttcaacaagaa 3235  T
Q  154 tcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaatga 219  Q
    |||  || |||||||||| || ||||||||||   || |||||| ||||  |||||||||| ||||    
T  3236 tcatacatcaattcatgaatttcactcaaatagtcaaaaatcatgaaaacaacttaacaactatga 3301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 104 - 212
Target Start/End: Original strand, 2942 - 3050
Alignment:
Q  104 aaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaat 203  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||  || || |||||| |||||    
T  2942 aaacataaacaaacattcatgaagtgaatttaaacatgtttcaacaacaaccactcacaaattcatgatttaaactcaaactagcaaaaatcataaaaat 3041  T
Q  204 cacttaaca 212  Q
    |||||||||    
T  3042 cacttaaca 3050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 1802 - 1966
Alignment:
Q  51 ttttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaa 150  Q
    ||||||||| |||||||||||||||||| ||||||||| | | ||||||||| ||||||  ||||| |||||||||||||||||||||| |||| |||||    
T  1802 ttttcattcgaacttcacaaacaaccaccccaattcaacc-caatcaacatacaaacatgtataaacatttatgaagtgaatttaaacacgttttaacaa 1900  T
Q  151 caatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaatcacttaacaacaa 216  Q
     || |||||   |||||||| ||  |||| ||||||| || |||||||||||  ||||| ||||||    
T  1901 taaccactctttaattcatggttcgcacttaaataagcaaaaatcatcaaaacaacttatcaacaa 1966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 206021 - 205918
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    ||||| ||| |||||||||||||||| ||||||||||| |||||| ||| ||||||| ||||||||| ||| ||| |||||||||||||||||||||||     
T  206021 ctcaagtttgattcaaacttcacaaataaccacaccaactcaaacaccaccaacatacaaacataaacaaaaattcatgaagtgaatttaaacatgtttt 205922  T
Q  146 aaca 149  Q
    ||||    
T  205921 aaca 205918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 210991 - 210888
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||| ||||| ||| ||| ||||||||| |||||||||||||     
T  210991 ctcaagtttcattcaaacttcacaaataaccacaccaactcaaactccattaacatacaaatataaacaaaaattgatgaagtgattttaaacatgtttt 210892  T
Q  146 aaca 149  Q
    ||||    
T  210891 aaca 210888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 204920 - 204853
Alignment:
Q  152 aatcactcaccaattcatgatttacactcaaataagaaagaatcat---caaaatcacttaacaacaa 216  Q
    ||||||||| ||||| |||||||||||||| ||||| || ||||||    ||||||||||||||||||    
T  204920 aatcactcatcaatttatgatttacactcatataagcaaaaatcataaaaaaaatcacttaacaacaa 204853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 310 - 419
Target Start/End: Complemental strand, 4305 - 4195
Alignment:
Q  310 atcgtgtcacgattgttgaaaa-cgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacac 408  Q
    ||||||||||||||  |||||| ||||||||||||| ||  |   ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  4305 atcgtgtcacgattactgaaaagcgtgtcacgatttggaatattggataaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacac 4206  T
Q  409 gattttaggaa 419  Q
    |||||||||||    
T  4205 gattttaggaa 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 310 - 419
Target Start/End: Complemental strand, 11435 - 11325
Alignment:
Q  310 atcgtgtcacgattgttgaaaa-cgtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacac 408  Q
    ||||||||||||||  |||||| ||||||||||||| ||  |   ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  11435 atcgtgtcacgattactgaaaagcgtgtcacgatttggaatattggataaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacac 11336  T
Q  409 gattttaggaa 419  Q
    |||||||||||    
T  11335 gattttaggaa 11325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 419
Target Start/End: Complemental strand, 945 - 835
Alignment:
Q  310 atcgtgtcacgattgttgaaaac-gtgtcacgatttagagcacatgatgaggttcattcgacattagttaaaacgtgtcacgatggctattttgtgacac 408  Q
    ||||||||||||||  ||||||  |||||||||||| ||  |   ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  945 atcgtgtcacgattactgaaaaatgtgtcacgatttggaatattggataaggttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacac 846  T
Q  409 gattttaggaa 419  Q
    |||||||||||    
T  845 gattttaggaa 835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 4396 - 4356
Alignment:
Q  241 ttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4396 ttttagagtctttttatgatatttttgagttcacaagcaag 4356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 11526 - 11486
Alignment:
Q  241 ttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11526 ttttagagtctttttatgatatttttgagttcacaagcaag 11486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 1036 - 996
Alignment:
Q  241 ttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  1036 ttttagagtatttttatgatatttttgagttcacaagcaag 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2087 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold2087
Description:

Target: scaffold2087; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 154
Target Start/End: Original strand, 94 - 202
Alignment:
Q  46 ctcaattttcattcaaacttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttc 145  Q
    ||||||||||||||||||| || |||||| |||| |||||||||  |||||||||||  |||||  ||||| || ||||||||||||| |||||||||||    
T  94 ctcaattttcattcaaactacataaacaatcacaacaattcaaagcccatcaacataacaacatgtataaaaatatatgaagtgaattcaaacatgtttc 193  T
Q  146 aacaacaat 154  Q
    |||||||||    
T  194 aacaacaat 202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 6387 - 6329
Alignment:
Q  361 ttcattcgacattagttaaaacgtgtcacgatggctattttgtgacacgattttaggaa 419  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  6387 ttcattcgacattggttaaaacgtgtcacgatggctatttcgtgacacgattttaggaa 6329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 6554 - 6489
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   ||||||||||||||||| |||||||||||||||||||| |||||    
T  6554 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcacaggcaag 6489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 4563 - 4627
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 281  Q
    ||||| ||||| |||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  4563 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaag 4627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 51801 - 51884
Alignment:
Q  119 tttatgaagtgaatttaaacatgtttcaacaacaatcactcaccaattcatgatttacactcaaataagaaagaatcatcaaaa 202  Q
    ||||||||||||| |||||| |||| |||||| ||||||||| ||||||||| |||||||| || |||| || |||||||||||    
T  51801 tttatgaagtgaaattaaacttgttccaacaataatcactcatcaattcatggtttacacttaattaagcaaaaatcatcaaaa 51884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 106154 - 106039
Alignment:
Q  64 ttcacaaacaaccacaccaattcaaactccatcaacatataaacataaataaatatttatgaagtgaatttaaacatgtttcaacaacaatcactcacca 163  Q
    |||||| |||||  || ||||||||||| || ||||||| ||| ||| ||||  || ||| ||||||||||| |||||||| |||||||||||||||| |    
T  106154 ttcacagacaacaccaacaattcaaacttcaacaacatacaaatatatataatcatatatcaagtgaatttagacatgtttgaacaacaatcactcacaa 106055  T
Q  164 attcatgatttacact 179  Q
    ||||||| | ||||||    
T  106054 attcatggtctacact 106039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 1044 - 1101
Alignment:
Q  216 atgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttca 273  Q
    |||||| ||||| |||||| |||||||||||||||||||||||||||||| |||||||    
T  1044 atgatgacagtcagtcatttcacatttttagagtctttttatgatattttggagttca 1101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 4880 - 4815
Alignment:
Q  217 tgatggcagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaaga 282  Q
    ||||| ||||| |||||||   |||||||||||||||||||||||||||||||||||||| |||||    
T  4880 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaaacaaga 4815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 18546 - 18588
Alignment:
Q  278 caagaaaaatagaagatttt-gaagaaagcaaaatcgtgtcac 319  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  18546 caagaaaaatagaagatttttgaagaaagcaaaaacgtgtcac 18588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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