View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8622_high_6 (Length: 425)
Name: NF8622_high_6
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 32726641 - 32726248
Alignment:
| Q |
16 |
gacatcactacaaaaggaaaaaa-ggataaatcaagtgtgcaaaggttgtcatagtaaacatgttttgcatagaataacttgaatctaaactatgcgttt |
114 |
Q |
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| T |
32726641 |
gacatcactacaaaaggaaaaaaaggataaatca-gtgtgcaaaggttgtcgtagtaaacatgttttgcatagaataacttgaatctaaactatgcgttt |
32726543 |
T |
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| Q |
115 |
acttgatgttaaaaataatatttaaatcatacttgatatcatgttatataaattacaccatcagaacaataaaaatacaaaattttaactccatgatacc |
214 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32726542 |
acttgatgttaaaaataatatttaaatcatccttgatattatgttatataaattacaccattagaacaataaaaatacaaaattttaactccatgatacc |
32726443 |
T |
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| Q |
215 |
cgactcctagactaactaattccaaatattgagtcatcatctccattcgcatacacagaagcagcctgggttcccaacgacattaactactgtgactcca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32726442 |
cgactcctagactaactaattccaaatattgagtcatcatctccattcgcatacacagaagcagcctgggttcccaacgacactaactactgtgactcca |
32726343 |
T |
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| Q |
315 |
tttatgtcataggtaaaataataacacctttcataatgaataatctacataattaagggaatattcaaagaagtcgcacaacacttagtatggtc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32726342 |
tttatgtcataggtaaaataataacacctttcataatgaataatctacataattaagggaatattcaaagaagtcgcacaacacttagtatggtc |
32726248 |
T |
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