View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8622_high_9 (Length: 409)
Name: NF8622_high_9
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_high_9 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 194 - 401
Target Start/End: Complemental strand, 2990611 - 2990404
Alignment:
| Q |
194 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaactcaaagaagaaggaaa |
293 |
Q |
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| T |
2990611 |
agagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaactcaaagaagaaggaaa |
2990512 |
T |
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| Q |
294 |
aatgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtac |
393 |
Q |
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| T |
2990511 |
aatgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtac |
2990412 |
T |
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| Q |
394 |
caccacca |
401 |
Q |
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|||||||| |
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| T |
2990411 |
caccacca |
2990404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 2990786 - 2990659
Alignment:
| Q |
19 |
aaaacaccacaaacagttgtttgtggacaatttccaagctcacatagtcctataatcggtaacaccattgatgttaacgcaattatttgtggatcacttg |
118 |
Q |
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| T |
2990786 |
aaaacaccacaaacagttgtttgtggacaatttccaagctcacatagtcctataatcggtaacaccattgatgttaacgcaattatttgtggatcacttg |
2990687 |
T |
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| Q |
119 |
tgaacatagtagcccaaatgtttctaac |
146 |
Q |
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| T |
2990686 |
tgaacatagtagcccaaatgtttctaac |
2990659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 28505456 - 28505530
Alignment:
| Q |
22 |
acaccacaaacagttgtttgtggacaatttccaagctcacatagtcctataatcggtaacaccattgatgttaac |
96 |
Q |
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| T |
28505456 |
acaccacaaccggttgtttggggacaatttccgagctcgcaaagtccaacaattggtaacacaatagatgttaac |
28505530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 195 - 401
Target Start/End: Original strand, 45845643 - 45845849
Alignment:
| Q |
195 |
gagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaactcaaagaagaaggaaaa |
294 |
Q |
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| T |
45845643 |
gagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaacttattgatgatggaaaa |
45845742 |
T |
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| Q |
295 |
atgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgtacc |
394 |
Q |
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| T |
45845743 |
atatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaaaatcatgatttcatacc |
45845842 |
T |
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| Q |
395 |
accacca |
401 |
Q |
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||||||| |
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| T |
45845843 |
accacca |
45845849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 45845473 - 45845519
Alignment:
| Q |
25 |
ccacaaacagttgtttgtggacaatttccaagctcacatagtcctat |
71 |
Q |
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| T |
45845473 |
ccacaacctgttgtttgtggacaatttccaagttcacatagccctat |
45845519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 24648 - 24526
Alignment:
| Q |
21 |
aacaccacaaacagttgtttgtggacaatttccaagctcacatagtcctataatcggtaacaccattgatgttaacgcaattatttgtggatcacttgtg |
120 |
Q |
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||||||||| | |||||||| ||||| || || || ||||||| |||||||| || || |||||||||||||| ||||| |||| | || ||||| |
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| T |
24648 |
aacaccacagcctgttgtttgaggacagttacctagttcacataaacctataattggcaaaaccattgatgttaaagcaatgatttctttgtcttttgtg |
24549 |
T |
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| Q |
121 |
aacatagtagcccaaatgtttct |
143 |
Q |
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|||||| ||||||| |||||||| |
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| T |
24548 |
aacatactagcccacatgtttct |
24526 |
T |
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