View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8622_low_1 (Length: 618)
Name: NF8622_low_1
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 297 - 608
Target Start/End: Complemental strand, 2101806 - 2101494
Alignment:
| Q |
297 |
taataacactggttacaccaccaaaaactta-gacacataagattcaaatcgggtaaaagtgttcacacctaacatgtgtagtgtctaataagttagttc |
395 |
Q |
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| T |
2101806 |
taataacactggttacaccaccaaaaacttaagacacataagattcaaatcgggtaaaagtgt-cacacctaacatgtgtagtgtctaataaattagttc |
2101708 |
T |
|
| Q |
396 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaa-tcatataagccggtaaatataaactataagctcatgaaaacgtg |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
2101707 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaaatcatataagcctgtaaatataaactataagctcgtgaaaacgtg |
2101608 |
T |
|
| Q |
495 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
594 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2101607 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaatttgcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
2101508 |
T |
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| Q |
595 |
gattcacctctctg |
608 |
Q |
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|||||||||||||| |
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| T |
2101507 |
gattcacctctctg |
2101494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 78 - 302
Target Start/End: Complemental strand, 2102306 - 2102059
Alignment:
| Q |
78 |
attcacccgactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgc |
177 |
Q |
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| T |
2102306 |
attcacccgactcccatctgcagaacgaagaacagctccagcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgc |
2102207 |
T |
|
| Q |
178 |
tgcaagattttgtttatg-ttacttcatag---------------------ataaacctta-gagttaaacatgacgggcaactccttatagaggatatc |
254 |
Q |
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| T |
2102206 |
tgcaagattttgtttatgtttacttcatagataaaatagagttatcatgatataaaccttaggagttaaacatgatgggcaacgccttatagaggatatc |
2102107 |
T |
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| Q |
255 |
aatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
302 |
Q |
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| T |
2102106 |
aatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
2102059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 2106297 - 2106201
Alignment:
| Q |
86 |
gactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaa |
182 |
Q |
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| T |
2106297 |
gactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattcccactggctgcaccatcaaactcaaggatacaagaaagctgcaa |
2106201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 2097810 - 2097714
Alignment:
| Q |
86 |
gactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaa |
182 |
Q |
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| T |
2097810 |
gactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattcccgctggctgcaccatcaaactcaaggatacaagaaagctgcaa |
2097714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 2102339 - 2102304
Alignment:
| Q |
1 |
tggacctataaagagacataaagtgttggctacatt |
36 |
Q |
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| T |
2102339 |
tggacctataaagagacataaagtgttagctacatt |
2102304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 2041794 - 2041741
Alignment:
| Q |
129 |
tccaggatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaa |
182 |
Q |
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||||||||||||||| || || |||||||||| |||||| ||||||| |||||| |
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| T |
2041794 |
tccaggatttccacttgacgcaccatcaaattgaaggatacaagaactctgcaa |
2041741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 5e-67; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 39183730 - 39183883
Alignment:
| Q |
35 |
tttgatatattgtataatgcaaaaatgatttgatggatagagtattcacccgactcccatctgcagaacggagaacagctccggcaccagaccttccagg |
134 |
Q |
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| T |
39183730 |
tttgacatattgtatagtgcaaaaatgatttgatggatagagtattcacccgactcccatctgcagaacgcagaacagctcctgcaccagaccttccagg |
39183829 |
T |
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| Q |
135 |
atttccactggatgctccatcaaattcaaggatgcaagaacgctgcaagatttt |
188 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
39183830 |
atttccactggatgctccatcaaattctaggatacaagaacgctgcaagatttt |
39183883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 453 - 579
Target Start/End: Original strand, 39184928 - 39185054
Alignment:
| Q |
453 |
atataagccggtaaatataaactataagctcatgaaaacgtgaaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtt |
552 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
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| T |
39184928 |
atataagccggtaaatataaactataagctcttgaaaacgtgaaaattacaaaacaaaactcttttaaaagcttataaaacataatccaaatttgcggtt |
39185027 |
T |
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| Q |
553 |
tgccaaacagatcctaatcattcataa |
579 |
Q |
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||||||||||||||||| |||| |||| |
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| T |
39185028 |
tgccaaacagatcctaaccattgataa |
39185054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 39184848 - 39184892
Alignment:
| Q |
393 |
ttcaactaaagctacaaggttaaaattgagaatgaaaaatgataa |
437 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39184848 |
ttcaattaaagctacaaggttaaaattgagaatgaaaaatgataa |
39184892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 39184394 - 39184433
Alignment:
| Q |
297 |
taataacactggttacaccaccaaaaacttagacacataa |
336 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
39184394 |
taataacactagttacaccaccaaaaacttagacacataa |
39184433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 39183930 - 39183970
Alignment:
| Q |
217 |
gagttaaacatgacgggcaactccttatagaggatatcaat |
257 |
Q |
| |
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|||||||| | |||||||||| ||||||||||||||||||| |
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| T |
39183930 |
gagttaaatacgacgggcaacaccttatagaggatatcaat |
39183970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 4952169 - 4952228
Alignment:
| Q |
152 |
catcaaattcaaggatgcaagaacgctgcaagattttgtttatgttacttcatagataaa |
211 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
4952169 |
catcaaattcaaggatacaagaacgctgcaagattttgtttatgttatctcataaataaa |
4952228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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