View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8622_low_10 (Length: 406)
Name: NF8622_low_10
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 22 - 396
Target Start/End: Complemental strand, 11340747 - 11340367
Alignment:
| Q |
22 |
ggaggatctctcaatcttgtacactttttatgtatctattcgattcaaagtatcttgttctgtaaggtatcttcacgtaatcatacatgaaagctttata |
121 |
Q |
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| T |
11340747 |
ggaggatttctcaatcttgtacactttttatgtatctattcgattcaaagtatcttgttctgtaaggtatcttcacgtaatcatacatgaaagctttata |
11340648 |
T |
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| Q |
122 |
tcttctttttctcgatccctagtcattttcacgtaatcatactgtcgannnnnnnaaactaccttattttgctctcattgaaatcaatacacacacatta |
221 |
Q |
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| T |
11340647 |
tcttctttttcttgatccctagtcattttcacgtaatcatactgtcgatttgtttaaactaccttattttgctctcattgaaatcaatatacacacatta |
11340548 |
T |
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| Q |
222 |
cagttacagtaaggaagctgatacgtccatctaatcccgaagacat-aaaatgcttgatcttttgtatataatggagaatcgattatctgcttttagtga |
320 |
Q |
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| T |
11340547 |
cagttacagtaaggaagcttatacgtccatctaatcccgaagacataaaaatgcttgatcttttgtatataatggagaatcgattaactgcttttagtga |
11340448 |
T |
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| Q |
321 |
tagtgattgggctgcatgcatatc----tagattccaaaaaatttgtcacatgattcaac-atttttcttagttcatctca |
396 |
Q |
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||||||||||||||||||||| | ||||||||||||| | |||||||||||||||| || |||||||||||||||| |
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| T |
11340447 |
tagtgattgggctgcatgcatgcctgcatagattccaaaaagtctgtcacatgattcaacggttcttcttagttcatctca |
11340367 |
T |
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