View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8622_low_13 (Length: 349)
Name: NF8622_low_13
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 47443454 - 47443126
Alignment:
| Q |
16 |
agatggatgattttaaaaaagttcctgaattttcaacatcaattggtaacttggatgaaattagagactccgatcctatggctgtcacttcattatggtc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47443454 |
agatggatgattttaaaaaagttcctgaattttcaacatcaattggtaacttggatgaaattagagactccgatcctatggctgtcacttcattatggtc |
47443355 |
T |
|
| Q |
116 |
ctccataggtacgctttgcgtcttgtacaaaagtatcgtcttttacgggtcaattagttaagaaaagggtt--gtgtttcattattgttgtgtgttttgg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47443354 |
ctccataggtacgctttgcgtcttgtacaaaagtatcgtcttttacgggtcaattagttaagaaaagggttgtgtgtttcattattgttgtgtgttttgg |
47443255 |
T |
|
| Q |
214 |
atatgttcttgataaaagtgtgaggctttctaaaagctatatatgttctttgctcccttagaaagagtttggctgttctgtcacgagcaaacttatctcc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47443254 |
atatgttcttgataaaagtgtgaggctttctaaaagctatatatgttctttgctcccttagaaagagtttggctgttctgtcacgagcaaacttatctcc |
47443155 |
T |
|
| Q |
314 |
aacaaagagaatcttatggttctctgctt |
342 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
47443154 |
aacaaagagaatcttatggttctttgctt |
47443126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University