View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8622_low_15 (Length: 322)
Name: NF8622_low_15
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 314
Target Start/End: Complemental strand, 38767298 - 38766994
Alignment:
| Q |
14 |
tcataatcaatccaaacacaaccttaatttgctaatgtaggctacttattgagatgctcgttttattataattatcactggtgatattcttccctggttt |
113 |
Q |
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| T |
38767298 |
tcataatcaatccaaacacaaccttaatttgctaatgtaggctacttattgagatgctcggtttattataattatctctggtgatattcttccctggttt |
38767199 |
T |
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| Q |
114 |
tatttttcatgatatcaagatttatgtgcaaacctgnnnnnnnnnnn----aatctccttgttgcttgcagaacacggctgtttaatactgtttcaaaat |
209 |
Q |
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| T |
38767198 |
tatttttcatgatatcaagatttatgtgcaaacctgtttttttttttttttaatctccttgttgcttgcagaacacagctgtttaatactgtttcaaaat |
38767099 |
T |
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| Q |
210 |
tgttctctttgagcattgcaatggaggtgtagagaatatttatctatccacaattagatgctcagaattcaacaatgaagcgttatgtttatattgatga |
309 |
Q |
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| T |
38767098 |
tgttctctttgagcattgcaatggaggtgtagagaatatttatctatccacaattagatgctcagaattcaacaatgaagcgttatgtttacattgatga |
38766999 |
T |
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| Q |
310 |
tgatg |
314 |
Q |
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||||| |
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| T |
38766998 |
tgatg |
38766994 |
T |
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