View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8622_low_2 (Length: 584)
Name: NF8622_low_2
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 19 - 584
Target Start/End: Original strand, 35127446 - 35128011
Alignment:
| Q |
19 |
agggatactctgattactagtactagtcaacactggtatgaacctaataccaataatggtagcaaagtgaactatgtgttcaagaagggactcaatatgg |
118 |
Q |
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| T |
35127446 |
agggatactatgattactagtactagtcaacactggtttgaacctaataccaataatggtagcaaagtgaactatgtgttcaagaagggactcaatatgg |
35127545 |
T |
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| Q |
119 |
gaaagaagatattagtttttggttttgtagccacttctgttcctattattcttccaggttttgtagttgcttctgctattggtcttgtagtttccatgcc |
218 |
Q |
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| T |
35127546 |
gaaagaagatattagtttttggttttgtagccacttctgttcctattgttcttccaggttttgtagttgcttctgctattggtcttgtagtttccatgcc |
35127645 |
T |
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| Q |
219 |
ttgtgctttgttcttagttagccatagttgtactcagaatttaatgagtaagttgctccctcagcctagtcctacttatcaaggacagggtccactgcta |
318 |
Q |
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| T |
35127646 |
ttgtgctttgttcttagttagccatagttgtactcagaatttaatgagtaagttgctccctcagcctagtcctacttatcaaggacagggtccactgcta |
35127745 |
T |
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| Q |
319 |
cttgaagacgtgcgtttcaagcaagatagtgatattacagatttgaatgaagaggatgaagcaaagagagacaatgaaatggttgatgttagcgaggaaa |
418 |
Q |
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| T |
35127746 |
cttgaagacgtgcgtttcaagcaagatagtgatattacagatttgaatgaagaggatgaagcaaagagagacaatgaaatggttgatgttagtgaggaaa |
35127845 |
T |
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| Q |
419 |
gtgtcatattggataatgattatgggcaaagggctgtgaacgaggagttcgagccggaattatcacattcaagtgatgccaacgatgtcatccagtacaa |
518 |
Q |
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| T |
35127846 |
gtgtgatattggataatgattatgggcaaagggctgtgaacgaggagttcgagccggaattatcacattcaagtgatgccaacgatgtcatccagtacaa |
35127945 |
T |
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| Q |
519 |
tggttctgagaaagacagcactgattatttctctgaggaggaaccttcaccacataagcttgatga |
584 |
Q |
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| T |
35127946 |
tggttctgagaaagacagcactgattatttctctgaggaggaaccttcaccacataagcttgatga |
35128011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 121 - 325
Target Start/End: Complemental strand, 26779344 - 26779140
Alignment:
| Q |
121 |
aagaagatattagtttttggttttgtagccacttctgttcctattattcttccaggttttgtagttgcttctgctattggtcttgtagtttccatgcctt |
220 |
Q |
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||||||| |||||| ||||||||| ||| ||||||| ||| || ||||| |||||||||||||||||||||||| ||| |||| |||||| || ||| |
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| T |
26779344 |
aagaagaaattagtggttggttttgaagcaacttctgcccctcttgttctttcaggttttgtagttgcttctgctaatggccttgcagtttctctgtctt |
26779245 |
T |
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| Q |
221 |
gtgctttgttcttagttagccatagttgtactcagaatttaatgagtaagttgctccctcagcctagtcctacttatcaaggacagggtccactgctact |
320 |
Q |
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| T |
26779244 |
atgctttcttcttggttttccgttcatacactcatgatttaacgagtaagttgctgcctaagcctaggcctactcctcagggacagggtcccctgctact |
26779145 |
T |
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| Q |
321 |
tgaag |
325 |
Q |
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||||| |
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| T |
26779144 |
tgaag |
26779140 |
T |
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Back To:
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