View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8622_low_23 (Length: 239)
Name: NF8622_low_23
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36017211 - 36016987
Alignment:
| Q |
1 |
tgatcaaccagcttttagacattgatcatcatgtgtcttttatagttcatctgaccatagctcaattgttaaactgtcagattttatattaattcaacga |
100 |
Q |
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| T |
36017211 |
tgatcaaccagcttttagacattgatcatcatgtgtcttttatagttcatctgactatagctcaattgttaaactatcagattttatattaattcaacga |
36017112 |
T |
|
| Q |
101 |
ttgatctatggtcagatgatctatagagac--gaagaatctaaacaacatattctnnnnnnnttgtactttcaatagtcctgctgtggaggaaacattga |
198 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
36017111 |
ttgatctatggtcagatgatctatagagacatgaagaatccaaacaacatattctaaaaaaattgtactttcaatagtcctgctctggaggaaacattga |
36017012 |
T |
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| Q |
199 |
caattgttggagaagtggatagttg |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
36017011 |
caattgttggagaagtggatagttg |
36016987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28889047 - 28888823
Alignment:
| Q |
1 |
tgatcaaccagcttttagacattgatcatcatgtgtcttttatagttcatctgaccatagctcaattgttaaactgtcagattttatattaattcaacga |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
28889047 |
tgatcaactagcttttagacattgatcatcatgtgtcttttatagttcatctgaccatagttcaattgttaaactatcagattttatattaattcaacga |
28888948 |
T |
|
| Q |
101 |
ttgatctatggtcagatgatctatagag--acgaagaatctaaacaacatattctnnnnnnnttgtactttcaatagtcctgctgtggaggaaacattga |
198 |
Q |
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|| ||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
28888947 |
ttaatctatggtcagatgatctatagagatatgaagaatccaaacaacatattctaaaaaaattgtactttcaatagtcctgctctggaggaaacattga |
28888848 |
T |
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| Q |
199 |
caattgttggagaagtggatagttg |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
28888847 |
caattgttggagaagtggatagttg |
28888823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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