View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8622_low_28 (Length: 211)
Name: NF8622_low_28
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_low_28 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 29399192 - 29399402
Alignment:
| Q |
1 |
accatcatcgtcatcacctctctcagctttgatctatgatgttagtttgatttcacctttggtttccatcatggagagtttcacttttcctagctacata |
100 |
Q |
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| T |
29399192 |
accatcatcgtcatcacctctctcagctttgatctatgatgttagtttgatttcacctttggtttccatcatggagagtttcacttttcctagctacata |
29399291 |
T |
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| Q |
101 |
tatttcatagcaccagcaagaatgttttctttctttgcatatttatctgttctttctgagaaaagcaatgatggtaaacatttttcatgcattggtgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29399292 |
tatttcatagcaccagcaagaatgttttctttctttgcatatttatctgttctttctgagaaaagcaatgatggtaaacatttttcatgcattggtgatg |
29399391 |
T |
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| Q |
201 |
ctgttgaaatc |
211 |
Q |
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||||||||||| |
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| T |
29399392 |
ctgttgaaatc |
29399402 |
T |
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