View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8622_low_3 (Length: 465)
Name: NF8622_low_3
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 4134930 - 4135387
Alignment:
| Q |
1 |
tctcattcgtgctggtaaatcctactacctgctaaaactatagaccattttttgaaccctatgatagttagagtaagagttccaagaatctgaaattctg |
100 |
Q |
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| T |
4134930 |
tctcattcgtgctggtaaatcctactacctgctaaaactatagaccattttttgaaccctatgatagttagagtaagagttccaagaatctgaaattctg |
4135029 |
T |
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| Q |
101 |
ccataaaataagtaatgttctgagcaaagattattttagctaaagttcgaactcagtatacttctaaacgatttgtcttaactaaaactcaattatagac |
200 |
Q |
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| T |
4135030 |
ccataaaataagtaatgttctgagcaaagattattttagctaaagttcgaactcagtatacttctaaacgatttgtcttaactaaaactcaattatagac |
4135129 |
T |
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| Q |
201 |
tataaatgttcaatcattttttcatggttattatatattgccataaatgaatctaaatatttttgctattgtgtggtgggatgcagcaatactcaataga |
300 |
Q |
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| T |
4135130 |
tataaatgttcaatcattttttcatggttattatatattgccataaatgaatctaaatatttttgctattgtgtggtgggatgcagcaatactcaataga |
4135229 |
T |
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| Q |
301 |
gctaacaaaggagcgaattgagggagtccacgtggagcacatcgagatatctgggttgccgatgttgaacactgatcttgaggtggatggcacgtatccg |
400 |
Q |
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| T |
4135230 |
gctaacaaaggagcgaattgagggagtccacgtggagcacatcgagatatctgggttgccgatgttgaacactgatcatgaggtggatggcacgtatccg |
4135329 |
T |
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| Q |
401 |
acggaagcggaagtgttttgtcagaaggttctagaagctaattcatatgtctctgctt |
458 |
Q |
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| T |
4135330 |
acggaagcggaagtgttttgtcagaaggttctagaagctaattcatatctctttgctt |
4135387 |
T |
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