View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8622_low_5 (Length: 456)

Name: NF8622_low_5
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8622_low_5
NF8622_low_5
[»] chr4 (6 HSPs)
chr4 (1-442)||(52993465-52993916)
chr4 (221-268)||(29296105-29296152)
chr4 (221-267)||(29295971-29296017)
chr4 (294-362)||(11429316-11429384)
chr4 (229-269)||(12223636-12223676)
chr4 (294-362)||(29296005-29296073)
[»] chr3 (6 HSPs)
chr3 (217-267)||(11494450-11494500)
chr3 (221-267)||(11494304-11494350)
chr3 (216-267)||(11494591-11494642)
chr3 (216-267)||(23903130-23903183)
chr3 (212-266)||(41539173-41539227)
chr3 (294-362)||(23903221-23903289)
[»] chr6 (1 HSPs)
chr6 (221-267)||(28929560-28929606)
[»] chr5 (1 HSPs)
chr5 (222-267)||(19214286-19214331)
[»] chr1 (1 HSPs)
chr1 (221-265)||(2494747-2494791)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 52993916 - 52993465
Alignment:
Q  1 cacgttagacttagaatggaaatactccttcctttatctttatcacttgctggacgaaagatagagattgatgaaataatgcatgagaaagtgatgtgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52993916 cacgttagacttagaatggaaatactccttcctttatctttatcacttgctggacgaaagatagagattgatgaaataatgcatgagaaagtgatgtgga 52993817  T
Q  101 accacgttttatttccattctcgcatcctgtattatacaagtaaagaagaagattaattattatactcgtatactataatttgcttctcaaaataatatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52993816 accacgttttatttccattctcgcatcctgtattatacaagtaaagaagaagattaattattatactcgtatactataatttgcttgtcaaaataatatt 52993717  T
Q  201 ttctataatttatatttggattaataggcttttaccctctgtcatataggcgaaatgtggtttaccctcatataaaaataaagtttagagatc------- 293  Q
    ||||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||           
T  52993716 ttctataatttatatttaggttaataggcttttaccccctgtcatatagacgaaatgtggtttaccatcatgtaaaaataaagtttagagatcccatgta 52993617  T
Q  294 ---taaagattctttagttttggaacttcattgcatataacagtgcataaattaatgggttaataagcttttgtgtagttcagatgtcggtggtaagtta 390  Q
       |||||||||||||||||| || |||||||||||||||| |||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52993616 atttaaagattctttagttttagaccttcattgcatataactgtgcaggaattaatgggttaataggcttttgtgtagttcagatgtcggtggtaagtta 52993517  T
Q  391 catacatcaaatcaattttgcactatgatatgaataaaaattttatgttcct 442  Q
    ||||||||  ||||||| ||||||||||||||||||||  ||||||||||||    
T  52993516 catacatcgcatcaattgtgcactatgatatgaataaagtttttatgttcct 52993465  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 29296152 - 29296105
Alignment:
Q  221 ttaataggcttttaccctctgtcatataggcgaaatgtggtttaccct 268  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||    
T  29296152 ttaataggcttttaccctctgtcatacaggcgaaatttggtttaccct 29296105  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 29296017 - 29295971
Alignment:
Q  221 ttaataggcttttaccctctgtcatataggcgaaatgtggtttaccc 267  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  29296017 ttaatatgcttttaccctctgtcatataggcgaaatttggtttaccc 29295971  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 11429384 - 11429316
Alignment:
Q  294 taaagattctttagttttggaacttcattgcatataacagtgcataaattaatgggttaataagctttt 362  Q
    ||||||||| || |||||||| | ||| ||||||| || ||||| ||||| ||||||||||| ||||||    
T  11429384 taaagattcattggttttggaccctcagtgcatatgactgtgcagaaatttatgggttaataggctttt 11429316  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 12223676 - 12223636
Alignment:
Q  229 cttttaccctctgtcatataggcgaaatgtggtttaccctc 269  Q
    ||||||||| |||||||||||| ||||| ||||||||||||    
T  12223676 cttttaccccctgtcatataggtgaaatttggtttaccctc 12223636  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 29296073 - 29296005
Alignment:
Q  294 taaagattctttagttttggaacttcattgcatataacagtgcataaattaatgggttaataagctttt 362  Q
    |||| ||||||| |||||||| | | | ||||||| || ||||||||||| ||||||||||| ||||||    
T  29296073 taaaaattctttggttttggaccctgaatgcatatgactgtgcataaattcatgggttaatatgctttt 29296005  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 11494500 - 11494450
Alignment:
Q  217 tggattaataggcttttaccctctgtcatataggcgaaatgtggtttaccc 267  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  11494500 tggattaataggcttttaccccctgccatataggcgaaatttggtttaccc 11494450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 11494304 - 11494350
Alignment:
Q  221 ttaataggcttttaccctctgtcatataggcgaaatgtggtttaccc 267  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||    
T  11494304 ttaataggcttttaccccctgtcatatagacgaaatatggtttaccc 11494350  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 11494642 - 11494591
Alignment:
Q  216 ttggattaataggcttttaccctctgtcatataggcgaaatgtggtttaccc 267  Q
    |||| ||||||||||||||||| ||| |||||| ||||||| ||||||||||    
T  11494642 ttgggttaataggcttttaccccctgccatataagcgaaatatggtttaccc 11494591  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 23903130 - 23903183
Alignment:
Q  216 ttggattaataggcttttaccctc--tgtcatataggcgaaatgtggtttaccc 267  Q
    |||| ||||||||||||||||| |  || |||||||||||||||||||||||||    
T  23903130 ttgggttaataggcttttaccccccctgccatataggcgaaatgtggtttaccc 23903183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 41539227 - 41539173
Alignment:
Q  212 atatttggattaataggcttttaccctctgtcatataggcgaaatgtggtttacc 266  Q
    |||||| | ||| ||| ||||||||| ||| ||||||||||||||||||||||||    
T  41539227 atatttaggttagtagacttttaccccctgccatataggcgaaatgtggtttacc 41539173  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 23903221 - 23903289
Alignment:
Q  294 taaagattctttagttttggaacttcattgcatataacagtgcataaattaatgggttaataagctttt 362  Q
    |||||||||||| ||||| || | ||| ||||||| || ||||| ||||| ||||||||||| ||||||    
T  23903221 taaagattctttggttttagatcctcaatgcatatgactgtgcagaaatttatgggttaataggctttt 23903289  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 28929606 - 28929560
Alignment:
Q  221 ttaataggcttttaccctctgtcatataggcgaaatgtggtttaccc 267  Q
    |||||||||||||||||||||||||| ||||||||| || |||||||    
T  28929606 ttaataggcttttaccctctgtcataaaggcgaaatttgatttaccc 28929560  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 19214331 - 19214286
Alignment:
Q  222 taataggcttttaccctctgtcatataggcgaaatgtggtttaccc 267  Q
    |||||||||||||||| ||| ||||||||||| || ||||||||||    
T  19214331 taataggcttttaccccctgccatataggcgacatttggtttaccc 19214286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 2494791 - 2494747
Alignment:
Q  221 ttaataggcttttaccctctgtcatataggcgaaatgtggtttac 265  Q
    |||||| |||||||| | |||||||||||||||||| ||||||||    
T  2494791 ttaataagcttttactccctgtcatataggcgaaatttggtttac 2494747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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