View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8622_low_7 (Length: 418)
Name: NF8622_low_7
Description: NF8622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8622_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 187 - 408
Target Start/End: Original strand, 11441791 - 11442012
Alignment:
| Q |
187 |
gttgctatatcgcacgatnnnnnnnccacacaaacccacacgaaaaagctttcaacacatctgtgcgtacacgtctcttggccagcaccttcataaaagc |
286 |
Q |
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| T |
11441791 |
gttgctatatcgcacgataaaaaaaccgcacgaacccacacgaacaagctttcaacacatctgtgtttacacgtctcttggccagcaccttcataaaagc |
11441890 |
T |
|
| Q |
287 |
cgcaagaaccgtctccgccattgtcctgatcattgccgccccaaccaccatcataacaccagaattggttgctgccacatgttgccaaccactgcagaat |
386 |
Q |
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|||||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11441891 |
cgcaagcaccgtctccgccgttgtcttgatcattgtcgccccaaccaccatcataacaccagaattggttgctgccacaggttgccaaccactgcagaat |
11441990 |
T |
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| Q |
387 |
caccaccaacagtatgtctctg |
408 |
Q |
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||||||||||| |||||||||| |
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| T |
11441991 |
caccaccaacaatatgtctctg |
11442012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 219 - 408
Target Start/End: Complemental strand, 47656574 - 47656385
Alignment:
| Q |
219 |
aacccacacgaaaaagctttcaacacatctgtgcgtacacgtctcttggccagcaccttcataaaagccgcaagaaccgtctccgccattgtcctgatca |
318 |
Q |
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| T |
47656574 |
aacccacacgaacaagctttcaacacatctgtgcttacacgtctcttgaccagcaccttcataaaagccgcaagcaccgtctccgccgttgtcttgatca |
47656475 |
T |
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| Q |
319 |
ttgccgccccaaccaccatcataacaccagaattggttgctgccacatgttgccaaccactgcagaatcaccaccaacagtatgtctctg |
408 |
Q |
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| T |
47656474 |
ttgtcgccccaaccaccatcataacaccagaattggttgctgccacaggttgccaaccactgcagaatcaccaccaacaatatgtctctg |
47656385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 237 - 408
Target Start/End: Complemental strand, 54923005 - 54922834
Alignment:
| Q |
237 |
ttcaacacatctgtgcgtacacgtctcttggccagcaccttcataaaagccgcaagaaccgtctccgccattgtcctgatcattgccgccccaaccacca |
336 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||||||| |||| |||||||| |||||||||||||||||||| |
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| T |
54923005 |
ttcaacacatctgtgcgtacacgtctcttggctagcaccgtcataaaagacgcaagcaccgtcttcgccgttgtcctggtcattgccgccccaaccaccg |
54922906 |
T |
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| Q |
337 |
tcataacaccagaattggttgctgccacatgttgccaaccactgcagaatcaccaccaacagtatgtctctg |
408 |
Q |
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| T |
54922905 |
tgataacaccagagttggttgctgccacatgttgccaaccactgtagagtcaccaccaacaatatgtctctg |
54922834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 297 - 397
Target Start/End: Complemental strand, 50236516 - 50236416
Alignment:
| Q |
297 |
gtctccgccattgtcctgatcattgccgccccaaccaccatcataacaccagaattggttgctgccacatgttgccaaccactgcagaatcaccaccaac |
396 |
Q |
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||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50236516 |
gtctccgccgttgtcctggtcattgccgcccaaaccaccattataacaccagaattggttgctgccacatgttgccaaccactgcagaatcaccaccaac |
50236417 |
T |
|
| Q |
397 |
a |
397 |
Q |
| |
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| |
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| T |
50236416 |
a |
50236416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 28340102 - 28340284
Alignment:
| Q |
1 |
ctacctcttttcttcttctcactattcaacctgagacttggacgaatgctcactttaacacaaaggtatgtcattaaaatcatagcataaccatcaatta |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
28340102 |
ctacctcttttattcttctcactattcaacctgagacttggacgaatactcactttaacacaaaggtatgtcattaaaatcataacatgaccatcaatta |
28340201 |
T |
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| Q |
101 |
cttgtgttcatacatgtccataataatag-aaggttttgacactcttgcaagtatggaaatcataatctcacataagtattat |
182 |
Q |
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| T |
28340202 |
cttgtgttcatacatgtccataataatagaaaggttttgacacttttgcaagtatggaaatcatattctcacataagtattat |
28340284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 28335596 - 28335693
Alignment:
| Q |
90 |
accatcaattacttgtgttcatacatgtcc----ataataatagaa-ggttttgacactcttgcaagtatggaaatcataatctcacataagtattat |
182 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| |
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| T |
28335596 |
accatcaattacttgtgttcatacatgtccgtccataataatagaaaggttttgacacttttgcaggtatggaaatcatattctcatataagcattat |
28335693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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