View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8623_high_1 (Length: 437)
Name: NF8623_high_1
Description: NF8623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8623_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 418
Target Start/End: Complemental strand, 13705450 - 13705053
Alignment:
| Q |
15 |
tggacatccctagacatccgtcatcggtgcatgttcttggtccatcctaaatagttcagactttcttggacttctgtgtgcatgtcatacctcaggtaga |
114 |
Q |
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| T |
13705450 |
tggacatccctagacatccgtcatcggtgcatgttcttggtccatcccaaatagttcagactttcttggacttctgtgtgcatgtcatacctcaggtaga |
13705351 |
T |
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| Q |
115 |
gtggggtctagtgatggaagctccctagcagtacgcaccgatcgcgaggtatgtggcgtggtactttcaagtatctgacccaaagatactgccacatatt |
214 |
Q |
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| T |
13705350 |
gtggggtctagtgatggaagctccctgacagtacgcaccga------ggtatgtggcgtggtacttttaagtatctgacccaatgatactgccacatatt |
13705257 |
T |
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| Q |
215 |
gaaggaaatcctcctagattgggtaatgaggagctgattatttagtagaagcatgacagatttatgcctgattcattaagtatcatcaagacctgcatca |
314 |
Q |
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| T |
13705256 |
gaacgaaatcctcctagattgggtaatgaagagctgattatttagtagaagcatgccagagttatgcctgattcattaagtatcatcaggacctgcatca |
13705157 |
T |
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| Q |
315 |
acttggcggagtatgggttgagtcgtgacttgatagttgaggagtaccgtaatctcttgatgaggattaggactacatgcatgccaaccactacatattc |
414 |
Q |
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| T |
13705156 |
acttggcggaggaggggttgagtcgtgacttgatagttgaggagtactgtaatgtcttgatgaggattaggactacatgtatgccaaccactacatattc |
13705057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 10281717 - 10281651
Alignment:
| Q |
66 |
tagttcagactttcttggacttctgtgtgcatgtcatacctcaggtagagtggggtctagtgatgga |
132 |
Q |
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| T |
10281717 |
tagttcaggctttcttggatttctgtgtgcaggtcataccttagacatagtggggtctggtggtgga |
10281651 |
T |
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