View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8623_high_2 (Length: 278)
Name: NF8623_high_2
Description: NF8623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8623_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 37600468 - 37600731
Alignment:
| Q |
1 |
caccttccagatcctttctcccccatgactttgtcctttatcaccaccaccatcgtttctttgcctctcgccactatcaaccgccgaccaccgccgcgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
37600468 |
caccttccagatcctttctcccccatgactttgtcctttatcaccaccaccatcgtttctttgcctctcgccactatcaaccaccaaccaccgccgcgct |
37600567 |
T |
|
| Q |
101 |
gcccctcttctttcccccgacgttgaggtacgtcaccggccgtcatcatggagatccgttcgtcctcactctctatctaaaatctggtagtattcaccgg |
200 |
Q |
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||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37600568 |
gcccctcttctttcccc-gacgttgaggtacgtcgccggcaatcatcatggagatccgttcgtcctcactctctatctaaaatctggtagtattcaccgg |
37600666 |
T |
|
| Q |
201 |
cgttggtaacagagacgtcgtcgttggtcatcaaggagtctgtgtgcattgtattatgttgatgt |
265 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37600667 |
cgttggtaacagagacgtcgtcgttggtcatcatggagtctgtgtgcattgtattatgttgatgt |
37600731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 27661253 - 27660997
Alignment:
| Q |
1 |
caccttccagatcctttctcccccatgactttgtcctttatcaccaccaccatcgtttctttgcctctcgccactatcaaccgccgaccaccgccgcgct |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |
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| T |
27661253 |
caccttcca-atcctttctcccccatgactctgtcccctatcaccaccaccatcgtttctctgcctctcgccactatcaacc-------accaccgcgct |
27661162 |
T |
|
| Q |
101 |
gcccctcttctttcccccgacgttgaggtacgtcaccggccgtcatcatggagatccgttcgtcctcactctctatctaaaatctggtagtattcaccgg |
200 |
Q |
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||||||||| |||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
27661161 |
gcccctcttttttcccccgacgttgaggtacgtcgctggccatcatcatggagatccgttcgtcctcactctctatctgaaatatggtagtattcaccgg |
27661062 |
T |
|
| Q |
201 |
cgttggtaacagagacgtcgtcgttggtcatcaaggagtctgtgtgcattgtattatgttgatgt |
265 |
Q |
| |
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||||||||||||||| || ||| |||| ||| ||||||||||||||||||||||||||||||| |
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| T |
27661061 |
cgttggtaacagagatgttgtcaccggtcgtcatggagtctgtgtgcattgtattatgttgatgt |
27660997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 4096611 - 4096713
Alignment:
| Q |
123 |
ttgaggtacgtcaccggccgtcatcatggagatccgttcgtcctcactctct--atctaaaatctggtagtattcaccggcgttggtaacagagacgtcg |
220 |
Q |
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||||||||||||||||||| |||||||||| | |||| ||| |||||||||| || |||||||| ||||||||| ||||||||||| ||||||||| |
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| T |
4096611 |
ttgaggtacgtcaccggccatcatcatggaaaaccgtgcgttctcactctctccattcggaatctggtcgtattcaccagcgttggtaacggagacgtcg |
4096710 |
T |
|
| Q |
221 |
tcg |
223 |
Q |
| |
|
||| |
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| T |
4096711 |
tcg |
4096713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 52916129 - 52916231
Alignment:
| Q |
123 |
ttgaggtacgtcaccggccgtcatcatggagatccgttcgtcctcactctct--atctaaaatctggtagtattcaccggcgttggtaacagagacgtcg |
220 |
Q |
| |
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||||||||||||||||||| |||||||||| | |||| ||| |||||||||| || |||||||| ||||||||| |||||| |||| ||||||||| |
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| T |
52916129 |
ttgaggtacgtcaccggccatcatcatggaaaaccgtgcgttctcactctctccattcggaatctggtcgtattcaccagcgttgataacggagacgtcg |
52916228 |
T |
|
| Q |
221 |
tcg |
223 |
Q |
| |
|
||| |
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|
| T |
52916229 |
tcg |
52916231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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