View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8623_high_3 (Length: 247)
Name: NF8623_high_3
Description: NF8623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8623_high_3 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 33641467 - 33641691
Alignment:
| Q |
23 |
atggcccacggggaagctgtcaagaaggaacccgtgaattccaaaactccattattgaaagcaagaaccatacggcttcattcatgtttacaaatagtga |
122 |
Q |
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| T |
33641467 |
atggcccacggggaagctgtcaagaaggaacccgtgaattccaaaactccattattgaaagcaagaaccatacggcttcattcatgtttacaaatagtga |
33641566 |
T |
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| Q |
123 |
ttgacttataaaccaatcaataattattgaaaagaaggtgccacgaaatcaacgcttataaacttgttcataatatttatatatgcattttttaagttca |
222 |
Q |
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| T |
33641567 |
ttgacttataaaccaatcaataattattgaaaagaaggtgccacgaaatcaacgcttataaacttgttcataatatttatatatgcattttttaagttca |
33641666 |
T |
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| Q |
223 |
ttcataatattgatatgtgcctttt |
247 |
Q |
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| T |
33641667 |
ttcataatattgatatgtgcctttt |
33641691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 33307605 - 33307497
Alignment:
| Q |
144 |
aattattgaaaagaaggtgccacgaaatcaacgcttataaactt----gttcataatatttatat-atgcattttttaagttcattcataatattgatat |
238 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||| |
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| T |
33307605 |
aattattggtaagaaggtgccacgaaatcaacgcttataaacttgttcgttcataatatttatataatgcattttttaagttcatttataacattgatat |
33307506 |
T |
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| Q |
239 |
gtgcctttt |
247 |
Q |
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||| |||| |
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| T |
33307505 |
atgcttttt |
33307497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 33413054 - 33413002
Alignment:
| Q |
23 |
atggcccacggggaagctgtcaagaaggaacccgtgaattccaaaactccatt |
75 |
Q |
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| T |
33413054 |
atggcccactggaaagctgtcaagaagcaaccagtgaattccaaacctccatt |
33413002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 33288675 - 33288635
Alignment:
| Q |
140 |
caataattattgaaaagaaggtgccacgaaatcaacgctta |
180 |
Q |
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|||||| | |||||||||||||||||||||| ||||||||| |
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| T |
33288675 |
caataaattttgaaaagaaggtgccacgaaaccaacgctta |
33288635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 17437673 - 17437724
Alignment:
| Q |
130 |
ataaaccaatcaat-aattattgaaaagaaggtgccacgaaatcaacgctta |
180 |
Q |
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| T |
17437673 |
ataaacaaatcaatcaattattgtaaagaaagtgccacgaaatcaacgctta |
17437724 |
T |
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