View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8623_low_3 (Length: 306)
Name: NF8623_low_3
Description: NF8623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8623_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 289
Target Start/End: Original strand, 45824655 - 45824925
Alignment:
| Q |
21 |
agcgttgacatgggaacggaacagtgagcagttgatgtccttaaaatgaaattaaggagataaaaatatggatacgatgattagtgcacagatcccaagc |
120 |
Q |
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| T |
45824655 |
agcgttgacatgggaacggaacagtgagcagttgatgtccttaaaatgaaattaaggagataaaaatatggatacgatgattagtgcacagatcccaagc |
45824754 |
T |
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| Q |
121 |
aatattatccaactaaattgcatttaaatttattaagctaaactctactaccatgagt--aaacannnnnnnnnnnnnnnnnnnnattcacaagatatag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
45824755 |
aatattatccaactaaattgcatttaaatttattaagctaaactctactaccatgagtaaaaacatttttcttgttttattttttattcacaagatatag |
45824854 |
T |
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| Q |
219 |
aaaatgaagaatgaagccagagaggaaaagcagtatgtgttggtaatgaaggaagaaatgtcacgtgatgt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45824855 |
aaaatgaagaatgaagccagagaggaaaagcagtatgtgttggtaatgaaggaagaaatgtcacgtgatgt |
45824925 |
T |
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