View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8624_low_2 (Length: 241)
Name: NF8624_low_2
Description: NF8624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8624_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 27288353 - 27288388
Alignment:
| Q |
52 |
ttaaaaaccaaatattcaaatcatgtgtaagactct |
87 |
Q |
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| T |
27288353 |
ttaaaaaccaaatattcaaatcatgtgtaagactct |
27288388 |
T |
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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 27288415 - 27288447
Alignment:
| Q |
55 |
aaaaccaaatattcaaatcatgtgtaagactct |
87 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27288415 |
aaaaccaaatattcaaatcatgtgtaagactct |
27288447 |
T |
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