View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8625_high_4 (Length: 349)
Name: NF8625_high_4
Description: NF8625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8625_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 11990465 - 11990138
Alignment:
| Q |
15 |
atttggtcctccaaatattaaagtaaaccctataaagattgtttgcaccaaaccaagttagtccctcaaaatactagtgtctcattttgttggtccaata |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11990465 |
atttggccctccaaatattaaagtaaaccctataaagattgtttccaccaaaccaagttagtccctcaaaatacttgtgtctcattttgttggtccaata |
11990366 |
T |
|
| Q |
115 |
gctatataaagatttggtcacctgatagcccctatttaatgtaaaatgtcatcatattcattctttgagggacatttggcaattgtttcatatctttgat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11990365 |
gctatataaagatttggtcacctgatagcccctatttaatgtaaaatgtcatcatattcattctttgagggacatttggcaattgtttcatatctttgat |
11990266 |
T |
|
| Q |
215 |
ggacaaattggttgaagaaaatctttggaggagtaactagagggtttactctaagcatacacattttcatgacataaaatgatacagaataacctggtat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11990265 |
ggacaaattggttgaagaaaatctttggaggagtaactagagggtttactctaagcatacacattttcatgacatcaaatgatacagaataacctggtat |
11990166 |
T |
|
| Q |
315 |
tcattcaaatgctacatttgatgtccat |
342 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
11990165 |
tcattcaaatgctacattcgatgtccat |
11990138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 12020488 - 12020415
Alignment:
| Q |
15 |
atttggtcctccaaatattaaagtaaaccctataaa-gattgtttgcaccaaaccaagttagtccctcaaaata |
87 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||| |||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
12020488 |
atttggtcctccaaatattcgagtaatcccttcaaaagattttttccaccaaaccaagttagtccctcaaaata |
12020415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University