View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8625_low_2 (Length: 591)
Name: NF8625_low_2
Description: NF8625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8625_low_2 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 130 - 591
Target Start/End: Original strand, 36935780 - 36936248
Alignment:
| Q |
130 |
tgcctattttgactaaatatgtatgttcttcttgttgtatgaccaataaaatggcaatcagtattaatttatggataatgccagttttagacatgatgta |
229 |
Q |
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| T |
36935780 |
tgcctattttgactaaatatgtatgttcttcttgttgtatgaccaataaaatggcaatcaatattaatttatggataatgccagttttagacatgatgta |
36935879 |
T |
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| Q |
230 |
taataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccattttatgatgttttttgggcacaaatataccacatcccttcctatg |
329 |
Q |
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| T |
36935880 |
taataatgttatttactagtttgtttaatttctgcgtttctcgatgcataaccattttatgatgttttttgggcacaaatataccacatcccttcctatg |
36935979 |
T |
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| Q |
330 |
tataaatcatggcgaagttattcataaatatagacaactcctattcatggtgtttaa--------tcttgctcggttatgaattattttctttggttttt |
421 |
Q |
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| T |
36935980 |
tataaatcatggcgaagttattcataaatatagactactcctattcatggtgtttaatcttgcattcttgctcggttatgaatta-tttctttggttttt |
36936078 |
T |
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| Q |
422 |
gtatgctcagattgactacaggaagtctcgaaagtgaccattagatggttgtagaagagatcgaggctggagacatctcacattagcaatgtcctcagga |
521 |
Q |
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| T |
36936079 |
gtatgctcagattgactacaggtagtctcgaaagtgaccattagatggttttagaagagatcgaggttggagacatctcacattagcaatgtcctcagga |
36936178 |
T |
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| Q |
522 |
tgcaattccaaaaggtcaaacacatttagggtttttcgacaaattgaatgcaataacaccaaactcgaca |
591 |
Q |
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| T |
36936179 |
tgcaattccaaaaggtcaaacatatttagggtttttcgacaaattgaacacaataacaacaaactcgaca |
36936248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 36935713 - 36935772
Alignment:
| Q |
20 |
gatgtattatggctaagtggggattcattaggtcattgaataagttaacccccctaaatt |
79 |
Q |
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| T |
36935713 |
gatgtattatggctaagtggggattcattaggtcattgaataagttaacccccctaaatt |
36935772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 36956612 - 36956707
Alignment:
| Q |
112 |
gtgtgtgatgtaattgtgtgcctattttgactaaatatgtatgttcttcttgttgtatgaccaataaaatggcaatcagtattaatttatggataat |
208 |
Q |
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| T |
36956612 |
gtgtgagatgtaattgtgtgtctattttgac-caatatgtatgtttctcttatcgtgtgactaataaaatgccaacaaatattaatttatgaataat |
36956707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 541
Target Start/End: Original strand, 36956993 - 36957044
Alignment:
| Q |
489 |
tggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaa |
541 |
Q |
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| T |
36956993 |
tggagacatctcgcattagcaatatcctcagg-tgcaatttcagaaggtcaaa |
36957044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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