View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8625_low_3 (Length: 357)
Name: NF8625_low_3
Description: NF8625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8625_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 21 - 341
Target Start/End: Complemental strand, 7297086 - 7296766
Alignment:
| Q |
21 |
cggtccaaaatctgtgaccatgcattacacaatatgccaaggtggtaaaaagaattgcaagcacttgaaacgattgcgagaattctagccacaagaatga |
120 |
Q |
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| T |
7297086 |
cggtccaaagtctgtgaccatgcattacacaatatgccaaggtggtaaaaagaattgcaagcacttgaaacgattgcgagaattctagccacaagaatga |
7296987 |
T |
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| Q |
121 |
cattaaagtggaaatggaatggtaaaagagttgtaagaaaaccaatttacgacgtcttagaatggcgaaaaaagttataaacatatgaaggaaacgagat |
220 |
Q |
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| T |
7296986 |
cattaaagtggaaatggaatggtaaaagagttgtaagaaaaccaatttacgacgtcttagaatggcgaaaaaagttataaacatatgaaggaaacgagat |
7296887 |
T |
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| Q |
221 |
aggtagaaaatataagaccaaaagaaaacacggcctgaagggcgagtgccaagaggaaaacaaagtagccattgaagaggggtttttgatcgacgccaaa |
320 |
Q |
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| T |
7296886 |
aggtagaaaatataagaccaaaagaaaacacggcctgaagggcgagtgccaagaggaaaacaaagtagccattgaagaggggtttttgatcgacgccaaa |
7296787 |
T |
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| Q |
321 |
accatcgtgtttctttgattt |
341 |
Q |
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| T |
7296786 |
accatcgtgtttctttgattt |
7296766 |
T |
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