View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8625_low_4 (Length: 350)
Name: NF8625_low_4
Description: NF8625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8625_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 54219846 - 54220163
Alignment:
| Q |
17 |
gtggtggcactttctcaatccagaaggtccacggcgtttcttatctcatccttgcctttcaccttcgtttttctctctccgccaccaccagcggaggcta |
116 |
Q |
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| T |
54219846 |
gtggtggcactttctcaatccagaaggtccacggcgattcttatctcatccttgcctttcaccttcgtttttctctctccgccaccaccagcggaggcta |
54219945 |
T |
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| Q |
117 |
gagaaagacgcaagaaaaagaacattcccattgatgactatatcacttcccgtatttccttctttactcaacattcacatttgctgttaaactatcttct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54219946 |
gagaaagacgcaagaaaaagaacattcccattgatgattatatcacttcccgtatttccttctttactcaacattcacattttctgttaaactatcttca |
54220045 |
T |
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| Q |
217 |
atatcaaattattttctattttcacttttcttctgctctgtataaactaattcagaaacttgtgatgtttgattcagctgatggattaaaatactatgat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54220046 |
atatcaaattattttctattttcacttttcttctgctctgtataaactaattcagaaacttgtgatgtttgattcagctgatggattaaaatactatgat |
54220145 |
T |
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| Q |
317 |
tttcttgagggaaaaggt |
334 |
Q |
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|||||||||||||||||| |
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| T |
54220146 |
tttcttgagggaaaaggt |
54220163 |
T |
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