View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8625_low_8 (Length: 295)
Name: NF8625_low_8
Description: NF8625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8625_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 33279204 - 33279430
Alignment:
| Q |
18 |
caatgatgcccctaaactacgag-gctttgttatagtagtttatagttaaaagtttgttcaataaatggttatgttaaatggaaggttgtggaataagat |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33279204 |
caatgatgcccctaaactacgagtgctttgttatagt---ttatagtttaaagtttgttcaataaatggttatgttaaatggaaggttgtggaataagat |
33279300 |
T |
|
| Q |
117 |
aatttttagaaagtttacccgtgaaacttaatgaaataagttaaaaagagcttagagtagaggttatactaaagtctttcataggacaaagtatgattag |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33279301 |
aacttttagaaagtttacccgtgaaacttaatgaaataagttaaaaagagcttagagtagaggttatactaaagtctttcataggacaaagtatgattag |
33279400 |
T |
|
| Q |
217 |
ccttattgctttaaactgttatgatgacgt |
246 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
33279401 |
ccttattgctttaaactgttacgatgacgt |
33279430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 33280188 - 33280232
Alignment:
| Q |
247 |
tataagattagttattgctcacatgaattttccacaggttctgct |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33280188 |
tataagattagttattgctcacatgaattttccattggttctgct |
33280232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 53 - 238
Target Start/End: Original strand, 23780106 - 23780291
Alignment:
| Q |
53 |
tagtttatagttaaaagtttgttcaataaatggttatgttaaatggaaggttgtggaataagataatttttagaaagtttacccgtgaaacttaatgaaa |
152 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23780106 |
tagtttatagttaaaagtttgctcaataaatggttatgttaaatggaaggttgtggaataagataatttttagaaagtttacccgtgaaacttaatgaaa |
23780205 |
T |
|
| Q |
153 |
taagttaaaaagagcttagagtagaggttatactaaagtctttcataggacaaagtatgattagccttattgctttaaactgttat |
238 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
23780206 |
taagttaaaaagagcttagagtagagattatactaaagtctttcataggacaaagtatgattagcattattgctttaaattgttat |
23780291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University