View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8626_high_20 (Length: 217)
Name: NF8626_high_20
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8626_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 53368482 - 53368567
Alignment:
| Q |
93 |
cttcgaatatggttccaagatcaaaggaaactcgctataacacatgaaaaacaacgagagtagctgcttgtgtgtatatggtttct |
178 |
Q |
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| T |
53368482 |
cttcgaatatggttccaagatcaaaggaaactcgctataacacatgaaaaacaacgagagtagttgcttgtgtgtatatggtttct |
53368567 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 53368400 - 53368453
Alignment:
| Q |
11 |
gagaagaaagcatcttttcgccatagatcgaaactattagctaccaacatcttc |
64 |
Q |
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| T |
53368400 |
gagaagaaagcatcttttcgccatagatcgaaactattagctaccaacatcttc |
53368453 |
T |
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