View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8626_high_4 (Length: 343)
Name: NF8626_high_4
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8626_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 10993466 - 10993149
Alignment:
| Q |
13 |
acatctaactcttgagtgagttgtctagtaattgcaactccaccatttctcctaggttgtctagattgagaagcaaatggattgggaggtattggagttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10993466 |
acatctaactcttgagtgagttgtctagtaattgcaactccaccatttctcctaggttgtctagattgagaagcaaatggattgggaggtattggagttt |
10993367 |
T |
|
| Q |
113 |
tgtctacatctccctccaacatctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtcccacaatggccattttcct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10993366 |
tgtctacatctccctccaacatctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtcccacaatggccattttcct |
10993267 |
T |
|
| Q |
213 |
tgcaactttttcatccccttcatcgtcaacatgaattctcatttcctcttcatcatctataagtttataaatccattccggatagtaaacatgactactg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10993266 |
tgcaactttttcatccccttcatcgtcaacatgaattctcatttcctcttcatcatctataagtttataaatccattccggatagtaaacatgactactg |
10993167 |
T |
|
| Q |
313 |
ttttcctctaaatcctct |
330 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
10993166 |
ttttcctctaaatcctct |
10993149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 10931262 - 10930945
Alignment:
| Q |
13 |
acatctaactcttgagtgagttgtctagtaattgcaactccaccatttctcctaggttgtctagattgagaagcaaatggattgggaggtattggagttt |
112 |
Q |
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||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
10931262 |
acatccaactcttgagttagttgtctagtaattttagctccgccatttctcctaggttgtctagattgagaagcaaaaggatttggaggtattggagttt |
10931163 |
T |
|
| Q |
113 |
tgtctacatctccctccaacatctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtcccacaatggccattttcct |
212 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10931162 |
tgtcgacatctccctccaacatctgaaccaccatttgcattgttggtcgatgcatagcatgccactgaatgcaccataatcccacaatggccattttcct |
10931063 |
T |
|
| Q |
213 |
tgcaactttttcatccccttcatcgtcaacatgaattctcatttcctcttcatcatctataagtttataaatccattccggatagtaaacatgactactg |
312 |
Q |
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||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
10931062 |
tgcaattttttcatccccttcatcgtcaacctgtattctcatttcctcttgatcatctataagattataaatccactccggatagtaaacatgactactg |
10930963 |
T |
|
| Q |
313 |
ttttcctctaaatcctct |
330 |
Q |
| |
|
||||||||||| |||||| |
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| T |
10930962 |
ttttcctctaagtcctct |
10930945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 10907378 - 10907062
Alignment:
| Q |
13 |
acatctaactcttgagtgagttgtctagtaattgcaactccaccatttctcctaggttgtctagattgagaagcaaatggattgggaggtattggagttt |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
10907378 |
acatctaactcttgagttagttgtctagtaattgtagctccaccatttctcctaggctgtctagattgagaagcaaaaggattgggaggtattggagttt |
10907279 |
T |
|
| Q |
113 |
tgtctacatctccctccaacatctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtcccacaatggccattttcct |
212 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
10907278 |
tgtcgacatctccctccaacatttgaaccaccatttgcattgatggtcgatccatagcatgccactaaatgcaccagagtcccacaattgccattttcct |
10907179 |
T |
|
| Q |
213 |
tgcaactttttcatccccttcatcgtcaacatgaattctcatttcctcttcatcatctataagtttataaatccattccggatagtaaacatgactactg |
312 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||| |||||| ||||||||||||||||| |||||| |
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|
| T |
10907178 |
tgcaattttttcatccccttcatcatcaacatgaattctcatttcgtcttgatcatctataagattatcaatccactccggatagtaaacatg-ctactg |
10907080 |
T |
|
| Q |
313 |
ttttcctctaaatcctct |
330 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
10907079 |
ttttcctctaagtcctct |
10907062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 11041628 - 11041308
Alignment:
| Q |
10 |
atcacatctaactcttgagtgagttgtctagtaattgcaactccaccatttctcctaggttgtctagattgagaagcaaatggattgggaggtattggag |
109 |
Q |
| |
|
||||||||||| ||||| | || |||| ||| |||||| | ||| |||| ||||||| ||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
11041628 |
atcacatctaaatcttgtgctagatgtcccgtagttgcaattgcactatttttcctaggccgtctagattgagaagcaaagggatttggaggtattggag |
11041529 |
T |
|
| Q |
110 |
ttttgtctacatctccctccaacatctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtcccacaatggccatttt |
209 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
11041528 |
ttttgtcttcatctccctccaacatttgaaccaccatttgcattgatggtcgatccatagcatgccactgaatgcaccaaagtcccacgatggccatttt |
11041429 |
T |
|
| Q |
210 |
ccttgcaactttttcatccccttcatcgtcaacatgaattctcatttcctcttcatcatctataagtttataaatccattccggatagtaaacatgacta |
309 |
Q |
| |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
11041428 |
tcttgcaattttttcatccccttcatcatcaacatgaattctcatttcctcttcatcatctataagattataaatccactccggatagtaaacatgacta |
11041329 |
T |
|
| Q |
310 |
ctgttttcctctaaatcctct |
330 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
11041328 |
ctgttttcctctaaatcctct |
11041308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 61 - 330
Target Start/End: Complemental strand, 11026874 - 11026605
Alignment:
| Q |
61 |
ctcctaggttgtctagattgagaagcaaatggattgggaggtattggagttttgtctacatctccctccaacatctgaaccaccatttgcattgttggtc |
160 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||| ||||| |
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|
| T |
11026874 |
ctcctaggttgtctagattgggaatcaaaaggattgggaggtattggagttttgtctatattttcctccaacatctgaaccaccatttgcattgatggtc |
11026775 |
T |
|
| Q |
161 |
gatccatagcatgccactgaatgcaccatagtcccacaatggccattttccttgcaactttttcatccccttcatcgtcaacatgaattctcatttcctc |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||| |||||||||| |
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|
| T |
11026774 |
gatccatagcatgccactgaatgcaccatagtcccacaatggccatttttcttgcaattttttcatccccttcatcatcaatatgaattttcatttcctc |
11026675 |
T |
|
| Q |
261 |
ttcatcatctataagtttataaatccattccggatagtaaacatgactactgttttcctctaaatcctct |
330 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
11026674 |
ttcatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctct |
11026605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 8962896 - 8962811
Alignment:
| Q |
132 |
catctgaaccaccatttgcattgttggtcgatccatagcatgccactgaatgcaccatagtcccacaatggccattttccttgcaa |
217 |
Q |
| |
|
|||||| |||||||||| ||| | |||||||| || | |||||||||||||||||| ||||| ||||| || | |||| |||||| |
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|
| T |
8962896 |
catctgcaccaccattttcatggctggtcgatgcactgaatgccactgaatgcaccaaagtccgacaattgctagtttctttgcaa |
8962811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 9300649 - 9300612
Alignment:
| Q |
172 |
tgccactgaatgcaccatagtcccacaatggccatttt |
209 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| |
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|
| T |
9300649 |
tgccactgaatgcaccataatcccacaattgccatttt |
9300612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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