View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8626_high_7 (Length: 279)
Name: NF8626_high_7
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8626_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 25901415 - 25901666
Alignment:
| Q |
15 |
atgaaaacacatttttactacaaatgcgacaattaaaatgtaaccaagggagtagtaactaatgtacctctgagcaagaagcctgcattgtgaaatcatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25901415 |
atgaaaacacatttttactacaaatgcgacaattaaaatgtaaccaagggagtagtaactaatgtacctctgagcaagaagcctgcattgtgaaatcatt |
25901514 |
T |
|
| Q |
115 |
gaaacagctaataacacattgttgaatctcaaggccta---atgcttccaatgtgtttactgtggatatcaacaaccctggcttccgtgcacaacaaatt |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25901515 |
gaaacagctaataacatattgttgaatctcaaggcctaatgatgcttccaatgtgtttactgtggatatcaacaaccctggcttccgtgcacaacaaatt |
25901614 |
T |
|
| Q |
212 |
tcaacccttgtgtctgcactcctctccacctcaaactgcaaagtaacaaaaa |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25901615 |
tcaacccttgtgtctgcactcctctccacctcaaactgcaaagtaacaaaaa |
25901666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 52002433 - 52002685
Alignment:
| Q |
15 |
atgaaaacacatttttactacaaatgcgacaattaaaatgtaaccaagggagt----agtaactaatgtacctctgagcaagaagcctgcattgtgaaat |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| ||||| |||| | | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52002433 |
atgaaaacacatttttactacaactgcgacgtttaaaaagtaactaaggaattagtaagtaactaatgtacctctgagcaagaagcctgcattgtgaaat |
52002532 |
T |
|
| Q |
111 |
cattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggatatcaacaaccctggcttccgtgcacaacaaat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
52002533 |
cattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggatagcaacaaccctggcttccctgcacaacaaat |
52002632 |
T |
|
| Q |
211 |
ttcaacccttgtgtctgcactcctctccacctcaaactgcaaagtaacaaaaa |
263 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
52002633 |
ttcaacccttgtgtccgcgctcctctccacctcaaactgcaaagtaacaaaaa |
52002685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 29010180 - 29010065
Alignment:
| Q |
80 |
acctctgagcaagaagcctgcattgtgaaatcattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggata |
179 |
Q |
| |
|
|||||||||||||| || |||| || ||||||||||||| ||| |||||||| || ||||||||||||||||||||||| |||||||| ||||| || | |
|
|
| T |
29010180 |
acctctgagcaagatgcttgcaatgaaaaatcattgaaactgcttataacacactggtgaatctcaaggcctaatgcttctaatgtgttcactgttgaca |
29010081 |
T |
|
| Q |
180 |
tcaacaaccctggctt |
195 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
29010080 |
gtaacaatcctggctt |
29010065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 13148737 - 13148852
Alignment:
| Q |
80 |
acctctgagcaagaagcctgcattgtgaaatcattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggata |
179 |
Q |
| |
|
|||||||||||||| || |||| || ||||||||||||| ||| |||||||| || ||||||||||||||||||||||| |||||||| ||||| || | |
|
|
| T |
13148737 |
acctctgagcaagatgcttgcaatgaaaaatcattgaaactgcttataacacactgatgaatctcaaggcctaatgcttctaatgtgttcactgttgaca |
13148836 |
T |
|
| Q |
180 |
tcaacaaccctggctt |
195 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
13148837 |
gtaacaatcctggctt |
13148852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University