View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8626_low_10 (Length: 282)
Name: NF8626_low_10
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8626_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 267
Target Start/End: Complemental strand, 44342035 - 44341770
Alignment:
| Q |
5 |
atgtttttgcagatgcataccttatagatataaagaagacatagatggtaatatgagcaacgaattggaagtactagtggttagttcgcagaaaagtcag |
104 |
Q |
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| T |
44342035 |
atgtttgtgcagatgcataccttatagatataaagaagacatagatggtaataggagcaacgaattggaagtactagtggttagttcgcagaaaagtcag |
44341936 |
T |
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| Q |
105 |
agactaatgtttcctaaggtatccacattttttaaatt----aattttagtgttactcgcac-----attagtttgcttttggaacccccattcccatta |
195 |
Q |
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| T |
44341935 |
agactaatgtttcctaaggtatccacattttttaaattaattaatttcagtgttactcgcacattatattagtttgcttttggaa-ccccatt-ccatta |
44341838 |
T |
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| Q |
196 |
attggaatattaattaacatatcctatatatatatttgattgatctcaacagggaggatgggaacttgatga |
267 |
Q |
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| T |
44341837 |
attggaatattaattaacatatcc----tatatatttgattgatctcaacagggaggatgggaacttgatga |
44341770 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 11455629 - 11455690
Alignment:
| Q |
30 |
agatataaagaagacatagatggtaatatgagcaacgaattggaagtactagtggttagttc |
91 |
Q |
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| T |
11455629 |
agatataaacaagacattgatggcaatatgggtaatgaattggaagtacttgttgttagttc |
11455690 |
T |
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