View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8626_low_11 (Length: 279)
Name: NF8626_low_11
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8626_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 25901415 - 25901666
Alignment:
| Q |
15 |
atgaaaacacatttttactacaaatgcgacaattaaaatgtaaccaagggagtagtaactaatgtacctctgagcaagaagcctgcattgtgaaatcatt |
114 |
Q |
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| T |
25901415 |
atgaaaacacatttttactacaaatgcgacaattaaaatgtaaccaagggagtagtaactaatgtacctctgagcaagaagcctgcattgtgaaatcatt |
25901514 |
T |
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| Q |
115 |
gaaacagctaataacacattgttgaatctcaaggccta---atgcttccaatgtgtttactgtggatatcaacaaccctggcttccgtgcacaacaaatt |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901515 |
gaaacagctaataacatattgttgaatctcaaggcctaatgatgcttccaatgtgtttactgtggatatcaacaaccctggcttccgtgcacaacaaatt |
25901614 |
T |
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| Q |
212 |
tcaacccttgtgtctgcactcctctccacctcaaactgcaaagtaacaaaaa |
263 |
Q |
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| T |
25901615 |
tcaacccttgtgtctgcactcctctccacctcaaactgcaaagtaacaaaaa |
25901666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 52002433 - 52002685
Alignment:
| Q |
15 |
atgaaaacacatttttactacaaatgcgacaattaaaatgtaaccaagggagt----agtaactaatgtacctctgagcaagaagcctgcattgtgaaat |
110 |
Q |
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| T |
52002433 |
atgaaaacacatttttactacaactgcgacgtttaaaaagtaactaaggaattagtaagtaactaatgtacctctgagcaagaagcctgcattgtgaaat |
52002532 |
T |
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| Q |
111 |
cattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggatatcaacaaccctggcttccgtgcacaacaaat |
210 |
Q |
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| T |
52002533 |
cattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggatagcaacaaccctggcttccctgcacaacaaat |
52002632 |
T |
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| Q |
211 |
ttcaacccttgtgtctgcactcctctccacctcaaactgcaaagtaacaaaaa |
263 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
52002633 |
ttcaacccttgtgtccgcgctcctctccacctcaaactgcaaagtaacaaaaa |
52002685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 29010180 - 29010065
Alignment:
| Q |
80 |
acctctgagcaagaagcctgcattgtgaaatcattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggata |
179 |
Q |
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|||||||||||||| || |||| || ||||||||||||| ||| |||||||| || ||||||||||||||||||||||| |||||||| ||||| || | |
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| T |
29010180 |
acctctgagcaagatgcttgcaatgaaaaatcattgaaactgcttataacacactggtgaatctcaaggcctaatgcttctaatgtgttcactgttgaca |
29010081 |
T |
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| Q |
180 |
tcaacaaccctggctt |
195 |
Q |
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||||| |||||||| |
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| T |
29010080 |
gtaacaatcctggctt |
29010065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 13148737 - 13148852
Alignment:
| Q |
80 |
acctctgagcaagaagcctgcattgtgaaatcattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggata |
179 |
Q |
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|||||||||||||| || |||| || ||||||||||||| ||| |||||||| || ||||||||||||||||||||||| |||||||| ||||| || | |
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| T |
13148737 |
acctctgagcaagatgcttgcaatgaaaaatcattgaaactgcttataacacactgatgaatctcaaggcctaatgcttctaatgtgttcactgttgaca |
13148836 |
T |
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| Q |
180 |
tcaacaaccctggctt |
195 |
Q |
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||||| |||||||| |
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| T |
13148837 |
gtaacaatcctggctt |
13148852 |
T |
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