View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8626_low_12 (Length: 276)

Name: NF8626_low_12
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8626_low_12
NF8626_low_12
[»] chr7 (3 HSPs)
chr7 (29-261)||(8552933-8553165)
chr7 (117-170)||(5177149-5177202)
chr7 (211-256)||(5177216-5177261)
[»] chr4 (1 HSPs)
chr4 (26-261)||(49610567-49610802)
[»] chr8 (9 HSPs)
chr8 (26-192)||(5174499-5174665)
chr8 (79-172)||(5203701-5203794)
chr8 (115-192)||(6230175-6230252)
chr8 (30-166)||(5193414-5193550)
chr8 (211-261)||(1797460-1797510)
chr8 (72-172)||(1797519-1797619)
chr8 (29-64)||(5170330-5170365)
chr8 (210-261)||(5174710-5174761)
chr8 (211-261)||(5170507-5170557)
[»] chr6 (1 HSPs)
chr6 (115-170)||(16472299-16472354)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 8553165 - 8552933
Alignment:
Q  29 agagttgatcaagcattcatgaatcagtcaattaagnnnnnnncattgagagtattgtcattgtggattgttcttttggaagatggacatgcaattgagc 128  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8553165 agagttgatcaagcattcatgaatcagtcaattaagtttttttcattgagagtattgtcattgtggattgttcttttggaagatgaacatgcaattgagc 8553066  T
Q  129 atctcatttcttgttgtcctttcattgaacaaataactttgaagcattgttcagttttgagcccgggaggcggcgtaaaactcatgaagtctttgagcat 228  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8553065 atctcatttcttgttgtcctttcattgaacatataactttgaagcattgttcagttttgagcccgggaggcggcgtaaaactcatgaagtctttgagcat 8552966  T
Q  229 gcatggtctaccaaagctcaagacagttgatgt 261  Q
    |||||||||||||||||||||||||||||||||    
T  8552965 gcatggtctaccaaagctcaagacagttgatgt 8552933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 5177149 - 5177202
Alignment:
Q  117 atgcaattgagcatctcatttcttgttgtcctttcattgaacaaataactttga 170  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  5177149 atgcaattgaacatctcatttcttgttgtcctttgattgaacatataactttga 5177202  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 5177216 - 5177261
Alignment:
Q  211 catgaagtctttgagcatgcatggtctaccaaagctcaagacagtt 256  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||    
T  5177216 catgaagtctttgagcattcatggtctacttaagctcaagacagtt 5177261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 26 - 261
Target Start/End: Original strand, 49610567 - 49610802
Alignment:
Q  26 atcagagttgatcaagcattcatgaatcagtcaattaagnnnnnnncattgagagtattgtcattgtggattgttcttttggaagatggacatgcaattg 125  Q
    |||||| ||||||||||||||||| ||||||||||||||       | |||| ||||||||||||||||   || ||||||| | |||  ||||||||||    
T  49610567 atcagaattgatcaagcattcatgcatcagtcaattaagtttttttcgttgatagtattgtcattgtgggaagtccttttgggaaatgagcatgcaattg 49610666  T
Q  126 agcatctcatttcttgttgtcctttcattgaacaaataactttgaagcattgttcagttttgagcccgggaggcggcgtaaaactcatgaagtctttgag 225  Q
    | ||||||||||||||||||||||| |||||||| ||||||||||| | |||||  || |||||||  |||||||||  |||||||||||||| ||||||    
T  49610667 aacatctcatttcttgttgtcctttgattgaacatataactttgaatcgttgtttggtgttgagccttggaggcggcacaaaactcatgaagtgtttgag 49610766  T
Q  226 catgcatggtctaccaaagctcaagacagttgatgt 261  Q
    ||||| ||||||||||||||||||||||||||||||    
T  49610767 catgcttggtctaccaaagctcaagacagttgatgt 49610802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 5174499 - 5174665
Alignment:
Q  26 atcagagttgatcaagcattcatgaatcagtcaattaagnnnnnnncattgagagtattgtcattgtggattgttcttttggaagatggacatgcaattg 125  Q
    ||||||||||||||| ||||||||||| | |||||||||       |||||||||||||||||||||||   || ||||  ||| |||  ||||||||||    
T  5174499 atcagagttgatcaatcattcatgaataattcaattaagtgtttctcattgagagtattgtcattgtgggaggtcctttgtgaatatgagcatgcaattg 5174598  T
Q  126 agcatctcatttcttgttgtcctttcattgaacaaataactttgaagcattgttcagttttgagccc 192  Q
    || |||| |||||| |||||||||| |||||||| ||||||||||||  ||||||||| ||||||||    
T  5174599 agaatctgatttctcgttgtcctttgattgaacatataactttgaagtgttgttcagtgttgagccc 5174665  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 5203701 - 5203794
Alignment:
Q  79 agtattgtcattgtggattgttcttttggaagatggacatgcaattgagcatctcatttcttgttgtcctttcattgaacaaataactttgaag 172  Q
    ||||||||||||||||  ||| |||| |  ||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  5203701 agtattgtcattgtgggctgtcctttcgagagatgaacatgcaattgagcatctcatttcttgttgtcctttgattgaacatataactttgaag 5203794  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 6230175 - 6230252
Alignment:
Q  115 acatgcaattgagcatctcatttcttgttgtcctttcattgaacaaataactttgaagcattgttcagttttgagccc 192  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| | |||||||| | ||||||||    
T  6230175 acatgcaattgaacatctcatttcttgttgtcctttaattgaacatataactttgagggattgttcaatgttgagccc 6230252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 5193414 - 5193550
Alignment:
Q  30 gagttgatcaagcattcatgaatcagtcaattaagnnnnnnncattgagagtattgtcattgtggattgttcttttggaagatggacatgcaattgagca 129  Q
    ||||||||  ||||||||||||||| ||||||||        || | ||||||||||||||||||  ||| ||| ||  ||| | ||||||||| || ||    
T  5193414 gagttgatacagcattcatgaatcattcaattaaatttttctcactaagagtattgtcattgtggggtgtccttgtgagagacgaacatgcaatcgaaca 5193513  T
Q  130 tctcatttcttgttgtcctttcattgaacaaataact 166  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  5193514 tctcatttcttgttgtcctttgattgaacatataact 5193550  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 1797510 - 1797460
Alignment:
Q  211 catgaagtctttgagcatgcatggtctaccaaagctcaagacagttgatgt 261  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  1797510 catgaagtctttgagcatgcatggtctacttaagctcaagacagttgatgt 1797460  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 1797619 - 1797519
Alignment:
Q  72 cattgagagtattgtcattgtggattgttcttttggaagatggacatgcaattgagcatctcatttcttgttgtcctttcattgaacaaataactttgaa 171  Q
    |||| |||||| |||||||||||  |||  ||| | |||| | ||||| |||||| ||| | |||||||||||||| || |||||||| |||||||||||    
T  1797619 cattaagagtactgtcattgtgggatgtcgtttcgaaagacgaacatgtaattgaacattttatttcttgttgtccgttgattgaacatataactttgaa 1797520  T
Q  172 g 172  Q
    |    
T  1797519 g 1797519  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 5170330 - 5170365
Alignment:
Q  29 agagttgatcaagcattcatgaatcagtcaattaag 64  Q
    |||||||||||||||||||||||||| |||||||||    
T  5170330 agagttgatcaagcattcatgaatcattcaattaag 5170365  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 5174710 - 5174761
Alignment:
Q  210 tcatgaagtctttgagcatgcatggtctaccaaagctcaagacagttgatgt 261  Q
    ||||||| ||||||||||||| |||| || ||||||| ||||||||||||||    
T  5174710 tcatgaaatctttgagcatgcgtggtttatcaaagctgaagacagttgatgt 5174761  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 5170507 - 5170557
Alignment:
Q  211 catgaagtctttgagcatgcatggtctaccaaagctcaagacagttgatgt 261  Q
    |||||| ||||||||||| ||||| |||| |||||| ||||||||||||||    
T  5170507 catgaaatctttgagcatacatggcctactaaagctaaagacagttgatgt 5170557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 16472299 - 16472354
Alignment:
Q  115 acatgcaattgagcatctcatttcttgttgtcctttcattgaacaaataactttga 170  Q
    |||||||||||||||  ||||||||  ||||||||| |||||||| ||||||||||    
T  16472299 acatgcaattgagcaattcatttctcattgtcctttgattgaacatataactttga 16472354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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