View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8626_low_15 (Length: 243)
Name: NF8626_low_15
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8626_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 20231030 - 20230934
Alignment:
| Q |
1 |
aaagaacattgtgaggaaagtctttgtgttgcatttagtatacattgttgacaaagttgagagggaacatcatccctacataagaacatgccataga |
97 |
Q |
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| T |
20231030 |
aaagaacattgcaaggaaagtctttgtgttgcatttagtatacattgttgacaaagttgagagggaacatcatccctacataagaacatgccataga |
20230934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 22125014 - 22124918
Alignment:
| Q |
1 |
aaagaacattgtgaggaaagtctttgtgttgcatttagtatacattgttgacaaagttgagagggaacatcatccctacataagaacatgccataga |
97 |
Q |
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| T |
22125014 |
aaagaacattgcaaggaaagtctttgtgttgcatttagtatacattgttgacaaagttgagagggaacatcatccctacataagaacatgccataga |
22124918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 20230868 - 20230804
Alignment:
| Q |
163 |
gctttggttgataaggaagagaggagggtggtgagatcaaattggaatgaagtataggctgatgt |
227 |
Q |
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| T |
20230868 |
gctttggatgataaggaagagaggagggtggtgagatcaaattggaatgaagtataggctgatgt |
20230804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 22124852 - 22124788
Alignment:
| Q |
163 |
gctttggttgataaggaagagaggagggtggtgagatcaaattggaatgaagtataggctgatgt |
227 |
Q |
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| T |
22124852 |
gctttggatgataaggaagagaggagggtggtgagatcaaattggaatgaagtataggctgatgt |
22124788 |
T |
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Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 10403860 - 10403956
Alignment:
| Q |
1 |
aaagaacattgtgaggaaagtctttgtgttgcatttagtatacattgttgacaaagttgagagggaacatcatccctacataagaacatgccataga |
97 |
Q |
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|||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
10403860 |
aaagaacattctaaggaaagtctttgtgttgcatttactatacattgttgacaaagttgagagggaacatcacccctacataagaacataccataga |
10403956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 10404019 - 10404070
Alignment:
| Q |
166 |
ttggttgataaggaagagaggagggtggtgagatcaaattggaatgaagtat |
217 |
Q |
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|||| ||||||||||||||||||||| ||||| |||||||| || ||||||| |
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| T |
10404019 |
ttggatgataaggaagagaggagggttgtgaggtcaaattgaaaggaagtat |
10404070 |
T |
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