View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8626_low_17 (Length: 241)

Name: NF8626_low_17
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8626_low_17
NF8626_low_17
[»] chr3 (3 HSPs)
chr3 (1-234)||(11015431-11015664)
chr3 (4-232)||(11024446-11024674)
chr3 (5-222)||(11005872-11006089)
[»] chr4 (22 HSPs)
chr4 (127-170)||(48735423-48735466)
chr4 (27-88)||(49044140-49044201)
chr4 (27-87)||(48852734-48852794)
chr4 (107-197)||(48891385-48891472)
chr4 (127-170)||(48147758-48147801)
chr4 (111-169)||(7877727-7877785)
chr4 (116-170)||(48170592-48170646)
chr4 (124-170)||(48902929-48902975)
chr4 (27-76)||(7877807-7877856)
chr4 (27-76)||(7908398-7908447)
chr4 (26-67)||(48705329-48705370)
chr4 (26-67)||(48735352-48735393)
chr4 (111-167)||(7908325-7908381)
chr4 (130-177)||(48156465-48156512)
chr4 (127-169)||(7237764-7237806)
chr4 (127-169)||(7771396-7771438)
chr4 (127-169)||(7773858-7773900)
chr4 (127-169)||(7790081-7790123)
chr4 (27-72)||(7773776-7773821)
chr4 (127-172)||(48875841-48875886)
chr4 (37-77)||(45366187-45366227)
chr4 (38-78)||(45372033-45372073)
[»] chr8 (1 HSPs)
chr8 (31-87)||(4031858-4031914)
[»] chr5 (1 HSPs)
chr5 (27-74)||(179112-179159)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11015431 - 11015664
Alignment:
Q  1 tgattatactttacaaatccaggacactcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatattatcttctactgggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11015431 tgattatactttacaaatccaggacactcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatattatcgtctactgggt 11015530  T
Q  101 ctatacttgtattataggacacggataccaccaagtaatcatctcttaaatggtcatacccaaaaccatacagacaacatgaatatttggcatctaaatt 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11015531 ctatacttgtattataggacactgataccaccaagtaatcatctcttaaatggtcatacccaaaaccatacagacaacatgaatatttggcatctaaatt 11015630  T
Q  201 ggaagcaggaaaaggtatttgtttgtgatgtcca 234  Q
    ||||||||||||||||||||||||||||||||||    
T  11015631 ggaagcaggaaaaggtatttgtttgtgatgtcca 11015664  T

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Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 11024446 - 11024674
Alignment:
Q  4 ttatactttacaaatccaggacactcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatattatcttctactgggtcta 103  Q
    |||||||| || |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | | ||||||    
T  11024446 ttatacttcaccaatccaagacactcaatttcgttccatgtattagctctcaaagagaaaaacttcaaatgtgatgaaatattttcttcaattaggtcta 11024545  T
Q  104 tacttgtattataggacacggataccaccaagtaatcatctcttaaatggtcatacccaaaaccatacagacaacatgaatatttggcatctaaattgga 203  Q
    ||||  ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11024546 tactcttatcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatgaatatttggcatctaaattgga 11024645  T
Q  204 agcaggaaaaggtatttgtttgtgatgtc 232  Q
    || |||||| |||||||  ||||||||||    
T  11024646 aggaggaaatggtattttcttgtgatgtc 11024674  T

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Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 11005872 - 11006089
Alignment:
Q  5 tatactttacaaatccaggacactcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatattatcttctactgggtctat 104  Q
    ||||||| || |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| | ||||||||     
T  11005872 tatacttcaccaatccatgacactcaatttctttccatgtattcgctctcaatgagaaaaacttcaaacgtgatgaaatattatcttcaattgggtctac 11005971  T
Q  105 acttgtattataggacacggataccaccaagtaatcatctcttaaatggtcatacccaaaaccatacagacaacatgaatatttggcatctaaattggaa 204  Q
    |||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||  |||||| |||||||||||||||    
T  11005972 acttttatcataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatatagacaacatacatattttgcatctaaattggaa 11006071  T
Q  205 gcaggaaaaggtatttgt 222  Q
    | ||||||||||||||||    
T  11006072 ggaggaaaaggtatttgt 11006089  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 48735423 - 48735466
Alignment:
Q  127 accaccaagtaatcatctcttaaatggtcatacccaaaaccata 170  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  48735423 accaccaagtaatcatctgttaaatggtcatacccaaaaccata 48735466  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 49044140 - 49044201
Alignment:
Q  27 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatattat 88  Q
    ||||||||| |||||| ||||| |||||||||||||||||| ||||||| | ||||||||||    
T  49044140 ctcaatttcattccatctattatctctcaatgagaaaaactccaaatgtaatgaaatattat 49044201  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 48852794 - 48852734
Alignment:
Q  27 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatatta 87  Q
    ||||||||| ||||||| |||||||||||||||||||||||  |||||||| |||| ||||    
T  48852794 ctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacatta 48852734  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 48891472 - 48891385
Alignment:
Q  107 ttgtattataggacacggataccaccaagtaatcatctcttaaatggtcatacccaaaaccatacagacaacatgaatatttggcatctaa 197  Q
    |||||| ||||||||| || |||||||| ||||||||||||||    ||||||| ||||||||| ||| ||||| |||| |||||||||||    
T  48891472 ttgtatcataggacactgaaaccaccaactaatcatctcttaa---ctcatacctaaaaccatatagataacataaatagttggcatctaa 48891385  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 48147758 - 48147801
Alignment:
Q  127 accaccaagtaatcatctcttaaatggtcatacccaaaaccata 170  Q
    |||||||||||||||||| |||| ||||||||||||||||||||    
T  48147758 accaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 7877785 - 7877727
Alignment:
Q  111 attataggacacggataccaccaagtaatcatctcttaaatggtcatacccaaaaccat 169  Q
    |||||||||||  || ||||||||||||||||||||| | |||||||| ||||||||||    
T  7877785 attataggacaatgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccat 7877727  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 48170592 - 48170646
Alignment:
Q  116 aggacacggataccaccaagtaatcatctcttaaatggtcatacccaaaaccata 170  Q
    ||||||| || ||||| ||||||||||||||||| || |||||||||||||||||    
T  48170592 aggacactgaaaccactaagtaatcatctcttaactgatcatacccaaaaccata 48170646  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 48902975 - 48902929
Alignment:
Q  124 gataccaccaagtaatcatctcttaaatggtcatacccaaaaccata 170  Q
    ||||||| |||||||||||||||| | ||||||||||||||||||||    
T  48902975 gataccatcaagtaatcatctcttgagtggtcatacccaaaaccata 48902929  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 7877856 - 7877807
Alignment:
Q  27 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtg 76  Q
    |||| |||| |||||||||||| |||| ||||||||||||||||||||||    
T  7877856 ctcagtttctttccatgtattatctctaaatgagaaaaacttcaaatgtg 7877807  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 7908447 - 7908398
Alignment:
Q  27 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatgtg 76  Q
    ||||||||| |||||||||||| |||| | ||||||||||||||||||||    
T  7908447 ctcaatttctttccatgtattatctctaactgagaaaaacttcaaatgtg 7908398  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 48705329 - 48705370
Alignment:
Q  26 actcaatttcgttccatgtattagctctcaatgagaaaaact 67  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  48705329 actcaatttctttccatgtattaactctcaatgagaaaaact 48705370  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 48735352 - 48735393
Alignment:
Q  26 actcaatttcgttccatgtattagctctcaatgagaaaaact 67  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  48735352 actcaatttctttccaggtattagctctcaatgagaaaaact 48735393  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 7908381 - 7908325
Alignment:
Q  111 attataggacacggataccaccaagtaatcatctcttaaatggtcatacccaaaacc 167  Q
    |||||||||||  || ||||||||||||||||||||| | |||||||| ||||||||    
T  7908381 attataggacaatgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 48156465 - 48156512
Alignment:
Q  130 accaagtaatcatctcttaaatggtcatacccaaaaccatacagacaa 177  Q
    |||||||||||||||||||| || ||||||||||| ||||| ||||||    
T  48156465 accaagtaatcatctcttaattgatcatacccaaatccatatagacaa 48156512  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 7237764 - 7237806
Alignment:
Q  127 accaccaagtaatcatctcttaaatggtcatacccaaaaccat 169  Q
    ||||||||||||||||||||| | |||||||| ||||||||||    
T  7237764 accaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 7771438 - 7771396
Alignment:
Q  127 accaccaagtaatcatctcttaaatggtcatacccaaaaccat 169  Q
    ||||||||||||||||||||| | |||||||| ||||||||||    
T  7771438 accaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 7773858 - 7773900
Alignment:
Q  127 accaccaagtaatcatctcttaaatggtcatacccaaaaccat 169  Q
    ||||||||||||||||||||||  |||||||| ||||||||||    
T  7773858 accaccaagtaatcatctcttacctggtcataaccaaaaccat 7773900  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 7790123 - 7790081
Alignment:
Q  127 accaccaagtaatcatctcttaaatggtcatacccaaaaccat 169  Q
    ||||||||||||||||||||| | |||||||| ||||||||||    
T  7790123 accaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 7773776 - 7773821
Alignment:
Q  27 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaa 72  Q
    |||| |||| |||||||||||| |||| ||||||||||||||||||    
T  7773776 ctcagtttctttccatgtattatctctaaatgagaaaaacttcaaa 7773821  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 48875886 - 48875841
Alignment:
Q  127 accaccaagtaatcatctcttaaatggtcatacccaaaaccataca 172  Q
    ||||||||||||||||||  ||| || |||||||||||||||||||    
T  48875886 accaccaagtaatcatctgctaactgatcatacccaaaaccataca 48875841  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 45366187 - 45366227
Alignment:
Q  37 ttccatgtattagctctcaatgagaaaaacttcaaatgtga 77  Q
    |||||||||||||||||||||||||||| || ||| |||||    
T  45366187 ttccatgtattagctctcaatgagaaaatctccaagtgtga 45366227  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 45372033 - 45372073
Alignment:
Q  38 tccatgtattagctctcaatgagaaaaacttcaaatgtgaa 78  Q
    |||| |||||| |||||||||||||||||| ||||||||||    
T  45372033 tccaagtattatctctcaatgagaaaaactccaaatgtgaa 45372073  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 4031858 - 4031914
Alignment:
Q  31 atttcgttccatgtattagctctcaatgagaaaaacttcaaatgtgaagaaatatta 87  Q
    ||||| |||||||| || ||||||| ||||||||||| ||||||||| |||||||||    
T  4031858 atttctttccatgtgttggctctcagtgagaaaaactccaaatgtgatgaaatatta 4031914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 179159 - 179112
Alignment:
Q  27 ctcaatttcgttccatgtattagctctcaatgagaaaaacttcaaatg 74  Q
    ||||||||| |||||||||||| ||||||||||||||| || ||||||    
T  179159 ctcaatttctttccatgtattatctctcaatgagaaaatctccaaatg 179112  T

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