View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8626_low_2 (Length: 430)
Name: NF8626_low_2
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8626_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 31114388 - 31114667
Alignment:
| Q |
15 |
aaacaaacaggaaccaatggttcgttaaaaaattggcgacttgttttgcaagtaagagttatattatgagtacaaaaaagcatgcatcatcaacaacttc |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31114388 |
aaacaaacaggaacaaatggttcgttaaaaaattggtgacttgttttgcaagtaagagttatattatgagtacataaaagcatgcatcatcaacaacttc |
31114487 |
T |
|
| Q |
115 |
ctagacgagatggttacccacattctgtcttttctcccaatcaaataagc-tttagaaccaatgtccattcaaagaggtggatcccattatgccactcac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||| |||||||||||||||||| |
|
|
| T |
31114488 |
ctagacgagatggttacccacattctgtcttttctcccaatcaaataagcttttagaaccaatgtcctttctaagagttgggtcccattatgccactcac |
31114587 |
T |
|
| Q |
214 |
tctccattatctgcattgatgatagaagcttgtatcccataaacacagtgaactgggttcactttggacgattcatggac |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31114588 |
tctccattatctgcattgatgatagaagcttgtatcccagaaacacagtgaactgggttcactttggtcgattcatggac |
31114667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 31114681 - 31114739
Alignment:
| Q |
361 |
ataaatgggttgaagcatcaaaacgacgtcatctttatctatccttggttgatgtccat |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31114681 |
ataaatgggttgaagcatcaaaacgacgtcatctttatctatccttggttgatgtccat |
31114739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 31088499 - 31088611
Alignment:
| Q |
208 |
actcactctccattatctgcattgatgatagaagcttgtatcccataaacacagtgaactgggttcactttggacgattcatggacgcaattatgttcaa |
307 |
Q |
| |
|
|||||||||| || || || ||||||||| |||||| |||| | |||||||| ||| |||||||||||| | ||||| |||| ||||||||||||| |
|
|
| T |
31088499 |
actcactctctgttgtccgctttgatgatataagcttctatcaaagaaacacagagaagtgggttcactttcgttgattcgtggatacaattatgttcaa |
31088598 |
T |
|
| Q |
308 |
cccccactctcaa |
320 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
31088599 |
cccacactctcaa |
31088611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University