View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8626_low_20 (Length: 238)
Name: NF8626_low_20
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8626_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 20231307 - 20231530
Alignment:
| Q |
1 |
acatgaatgtagaagttgtctaagtggattgatagaggaacttccagtgtgttgtgaaggaagagttggaggaagagttctaaatccaagttgtaatatt |
100 |
Q |
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| T |
20231307 |
acatgaatgtagaagttgtctaagtggattgatagaggaacttccagtgtgttgtgaaggaagagttggaggaagagttctaaatccaagttgtaatatt |
20231406 |
T |
|
| Q |
101 |
aggtatgaattctaccctttttatatctcttctaatggttcatcaaatccttcatcacaacaaattatacttccccaaacaaaaaatttagatgctgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20231407 |
aggtatgaattctaccctttttatatctcttctaatggttcatcaaatccttcatcacaacaaattatacttccccaaacaaaaaatttagatgctgatt |
20231506 |
T |
|
| Q |
201 |
caattatttcagaacacccttttt |
224 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
20231507 |
caactatttcagaacacccttttt |
20231530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22125291 - 22125514
Alignment:
| Q |
1 |
acatgaatgtagaagttgtctaagtggattgatagaggaacttccagtgtgttgtgaaggaagagttggaggaagagttctaaatccaagttgtaatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22125291 |
acatgaatgtagaagttgtctaagtggattgatagaggaacttccagtgtgttgtgaaggaagagttggaggaagagttctaaatccaagttgtaatatt |
22125390 |
T |
|
| Q |
101 |
aggtatgaattctaccctttttatatctcttctaatggttcatcaaatccttcatcacaacaaattatacttccccaaacaaaaaatttagatgctgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22125391 |
aggtatgaattctaccctttttatatctcttctaatggttcatcaaatccttcatcacaacaaattatacttccccaaacaaaaaatttagatgctgatt |
22125490 |
T |
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| Q |
201 |
caattatttcagaacacccttttt |
224 |
Q |
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||| |||||||||||||||||||| |
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| T |
22125491 |
caactatttcagaacacccttttt |
22125514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 10403598 - 10403408
Alignment:
| Q |
1 |
acatgaatgtagaagttgtctaagtggattgatagaggaacttccagtgtgttgtgaaggaagagttggaggaagagttctaaatccaagttgtaatatt |
100 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
10403598 |
acatgattgtagaacttgtctaagtggattgatagagaaacttccattgtgttgtgaaggaagagttggagggagagttctgaatccaagttgtaatatt |
10403499 |
T |
|
| Q |
101 |
aggtatgaattctaccctttttatatctc---ttctaatggttcatcaa---atccttcatcacaacaaattatacttccccaaacaaaaa |
185 |
Q |
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||||||||||| |||||||||||| | || | || ||||||||||| || || |||||||||||||| ||||||| |||||||||| |
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| T |
10403498 |
aggtatgaattttaccctttttatctatccaatagtattggttcatcaatagatactacatcacaacaaattctacttccacaaacaaaaa |
10403408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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