View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8626_low_21 (Length: 238)
Name: NF8626_low_21
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8626_low_21 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 44912954 - 44912722
Alignment:
| Q |
6 |
gacatcatcagaaaagtgttcagaaaccaatgacatatgaattatgacgaaaataaatgtataattaaaagagaaaacaaacaataaactcttttattgt |
105 |
Q |
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| T |
44912954 |
gacatcatcagaaaagtgttcagaaaccaatgacatatgaattatgacgaaaataaatgtataataaaaagagaaaacaaacaataaactcttttattgt |
44912855 |
T |
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| Q |
106 |
tagtgcacaaaccctatagtcataacaagtcagatggtaatgcgaactaatatatttttcggcgcatactaaagaagtaaagattattagggaaatattt |
205 |
Q |
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| T |
44912854 |
tagtgcacaaaccctatagtcataacaagtcagatggtaatgcgaactaatatatttttcggcgcatactaaagaagtaaagattattagggaaatattt |
44912755 |
T |
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| Q |
206 |
ttgtggattcatgatgacaacccaagtagcagc |
238 |
Q |
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| T |
44912754 |
ttgtggattcatgatgacaacccaagtagcagc |
44912722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 33376691 - 33376754
Alignment:
| Q |
175 |
taaagaagtaaagattattagggaaatatttttgtggattcatgatgacaacccaagtagcagc |
238 |
Q |
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| T |
33376691 |
taaagaagtaaagattataagggaaagatttttgtggattcatgatgacaacccaagttgcagc |
33376754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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