View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8626_low_4 (Length: 367)
Name: NF8626_low_4
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8626_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 32604904 - 32605236
Alignment:
| Q |
19 |
catcaaaatgcaaaataggctttatataggccaaaaaagctaattatttaaaaaagagaagccccagtttcacacaccaccggcacttaattaatggcac |
118 |
Q |
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| T |
32604904 |
catcaaaatgcaaaataggctttatataggccaaaaaagctaattatttaaaaaagagaagccccagtttcacacaacaccggcacttaattaatggcac |
32605003 |
T |
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| Q |
119 |
taactctctcacctcaatttttcatcttagagattcccttatccattttccaaaacgagcccatattccgatcaattactagaatctgattttatgttta |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32605004 |
taactctctcacctcaatttttcaccttagagattcccttatccattttccaaaacaagcccatattccgatcaattactagaatctgattttatgttta |
32605103 |
T |
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| Q |
219 |
ttatggaatcaatgttttttcctacacaatattgattcaccatgttttgaaagtctaaccccttccgtcttacccggtctttgtttgtgttatggaatgg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |
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| T |
32605104 |
ttatggaatcaatgttttttcctacacaatattgattcaccatgttttgaaagtctaaccccttccgctttacccaatctttgtttgtgttttggaatgg |
32605203 |
T |
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| Q |
319 |
atttaaacccaatcaactacggattagatcaca |
351 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
32605204 |
atttaaacccaatcaactacagattagatcaca |
32605236 |
T |
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