View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8626_low_5 (Length: 349)
Name: NF8626_low_5
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8626_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 10141753 - 10142090
Alignment:
| Q |
1 |
gatagggaagatggaatacaagtaacatcttacaagcattgtttggtttaaaacaaaaggacaaagttcaagtactgtccaagtttgacacaa--cttta |
98 |
Q |
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| T |
10141753 |
gatagggaagatggaatacaagtaacatcttacaagcattgtttggtttaaaacaaaaggacaaagttcaagtactgtccaagtttgacacacagcttta |
10141852 |
T |
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| Q |
99 |
ttcttattcatacatttgttttgtttcatttacaaatcacaagcaaccagaatcagaatcaggtgcatgattcttaacccttttaattaagtcaagaacc |
198 |
Q |
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| T |
10141853 |
ttcttattcatacatttgttttgtgtcatttacaaatcacaagcaaccagaatcagaatcaggtgcatgattcttaacccttttaattaagtcaagaacc |
10141952 |
T |
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| Q |
199 |
tttcgaacaagttcccaaagaagaagcttactctagcccatcctcgagacgtttctggtgctttggtgttggctggtaccttcttcacattgaccatcac |
298 |
Q |
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| T |
10141953 |
tttcgaacaagttcccaaagaagaagcttactctagcccatcctcgagacgtttctggtgctttggtgttggctggtaccttcttcacattgaccatcac |
10142052 |
T |
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| Q |
299 |
agtctggccgatttctttacgcagtgcttcaatgatgt |
336 |
Q |
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| T |
10142053 |
agtctggccgatttctttacgcagtgcttcaatgatgt |
10142090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 10135316 - 10135288
Alignment:
| Q |
64 |
aagttcaagtactgtccaagtttgacaca |
92 |
Q |
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| T |
10135316 |
aagttcaagtactgtccaagtttgacaca |
10135288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 40685101 - 40685042
Alignment:
| Q |
185 |
ttaagtcaagaacctttcgaacaagttcccaaagaagaagcttactctagcccatcctcg |
244 |
Q |
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| T |
40685101 |
ttaagccaagaacctttccaacaagttaccaaagaagaagctagttttagcccatcctcg |
40685042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 40685017 - 40684961
Alignment:
| Q |
272 |
tggtaccttcttcacattgaccatcacagtctggccgatttctttacgcagtgcttc |
328 |
Q |
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| T |
40685017 |
tggtactttcttcacatctaccatcattgtcttgccgatttctttacgaagtgcttc |
40684961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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