View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8626_low_8 (Length: 331)

Name: NF8626_low_8
Description: NF8626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8626_low_8
NF8626_low_8
[»] chr1 (6 HSPs)
chr1 (103-316)||(37881940-37882150)
chr1 (104-172)||(37911890-37911958)
chr1 (18-65)||(37881855-37881902)
chr1 (18-59)||(37855627-37855668)
chr1 (18-59)||(37867815-37867856)
chr1 (18-59)||(37911800-37911841)
[»] scaffold0187 (6 HSPs)
scaffold0187 (104-195)||(6441-6533)
scaffold0187 (18-68)||(6571-6621)
scaffold0187 (18-59)||(16908-16949)
scaffold0187 (197-234)||(6387-6424)
scaffold0187 (120-195)||(27093-27170)
scaffold0187 (18-59)||(27236-27277)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 103 - 316
Target Start/End: Original strand, 37881940 - 37882150
Alignment:
Q  103 tctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttcatgtctataatt 201  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37881940 tctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatctttcaagtttattctttcttcatgtctataatt 37882039  T
Q  202 taattctaatttagagaacagtgcaaagtattcggataaaatgttccactcgtaagttacnnnnnnnnnnnngctaaggaacttcagtaaagagatcata 301  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||||||    
T  37882040 taattctaatttagagaacagtgcaaagtattcggataaagtgttccactcgtaagttac----ttttttttgctaaggaacttcagtaaagagatcata 37882135  T
Q  302 gttatcaaaacacag 316  Q
    |||||||||||||||    
T  37882136 gttatcaaaacacag 37882150  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 37911890 - 37911958
Alignment:
Q  104 ctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt 172  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  37911890 ctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatcttt 37911958  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 37881855 - 37881902
Alignment:
Q  18 aatctcaaattcactggcaagctcaacctgatcagtaggatacgaaca 65  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||    
T  37881855 aatctcaaattcattgccaagctcaacctgatcagtaggatacgaaca 37881902  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 37855627 - 37855668
Alignment:
Q  18 aatctcaaattcactggcaagctcaacctgatcagtaggata 59  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  37855627 aatctcaaattcattgccaagctcaacctgatcagtaggata 37855668  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 37867815 - 37867856
Alignment:
Q  18 aatctcaaattcactggcaagctcaacctgatcagtaggata 59  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  37867815 aatctcaaattcattgccaagctcaacctgatcagtaggata 37867856  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 37911800 - 37911841
Alignment:
Q  18 aatctcaaattcactggcaagctcaacctgatcagtaggata 59  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  37911800 aatctcaaattcattgccaagctcaacctgatcagtaggata 37911841  T

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Target: scaffold0187 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 6533 - 6441
Alignment:
Q  104 ctctgatgtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttcatgtct 195  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||||| ||||    
T  6533 ctctgttgtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataacctttcaagtttattctctcttcacgtct 6441  T

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Target: scaffold0187; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 6621 - 6571
Alignment:
Q  18 aatctcaaattcactggcaagctcaacctgatcagtaggatacgaacaatc 68  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  6621 aatctcaaattcattgccaagctcaacctgatcagtaggatacgaacaatc 6571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 16949 - 16908
Alignment:
Q  18 aatctcaaattcactggcaagctcaacctgatcagtaggata 59  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  16949 aatctcaaattcattgccaagctcaacctgatcagtaggata 16908  T

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Target: scaffold0187; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 6424 - 6387
Alignment:
Q  197 taatttaattctaatttagagaacagtgcaaagtattc 234  Q
    ||||||| || |||||||||||||||||||||||||||    
T  6424 taatttagttttaatttagagaacagtgcaaagtattc 6387  T

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Target: scaffold0187; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 27170 - 27093
Alignment:
Q  120 tattgattatcatttgtgaactatgccaattaatg-taaatatgaataatcttt-aagtttattctttcttcatgtct 195  Q
    ||||||||||||||||| |||||||  |||||||| | |||||||||||| ||| | ||||||||| |||| ||||||    
T  27170 tattgattatcatttgtaaactatgataattaatgtttaatatgaataatatttcatgtttattctctcttaatgtct 27093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 27277 - 27236
Alignment:
Q  18 aatctcaaattcactggcaagctcaacctgatcagtaggata 59  Q
    ||||||||||||| || |||| ||||||||||||||||||||    
T  27277 aatctcaaattcattgccaaggtcaacctgatcagtaggata 27236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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