View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8627_high_4 (Length: 236)
Name: NF8627_high_4
Description: NF8627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8627_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 11157273 - 11157480
Alignment:
| Q |
22 |
atcatcattatctttaatattcaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaata |
121 |
Q |
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|||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11157273 |
atcatcattatctttaatatacaaatttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaata |
11157372 |
T |
|
| Q |
122 |
gaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtgagga |
221 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||| |
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| T |
11157373 |
gaaattgtttgtaatttgggaggtaagaaaactccttcatatagtgcaaactctagttttggaagatggtggagatacaatctttcaagagcggtgaggg |
11157472 |
T |
|
| Q |
222 |
tgtccatc |
229 |
Q |
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|||||||| |
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| T |
11157473 |
tgtccatc |
11157480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 11128280 - 11128489
Alignment:
| Q |
20 |
atatcatcattatctttaatattcaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaa |
119 |
Q |
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||||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11128280 |
atatcatcattctctttaatatacaaatatgaaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaa |
11128379 |
T |
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| Q |
120 |
tagaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtgag |
219 |
Q |
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| T |
11128380 |
tagaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgacaactctagttttggaagatggtggagatacaaaatttcaagagtggtgag |
11128479 |
T |
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| Q |
220 |
gatgtccatc |
229 |
Q |
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| ||| |||| |
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| T |
11128480 |
ggtgttcatc |
11128489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 8864102 - 8863895
Alignment:
| Q |
22 |
atcatcattatctttaatattcaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaata |
121 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8864102 |
atcatcattatctttaatatacaaatttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatctttgttattcttacagatgtaata |
8864003 |
T |
|
| Q |
122 |
gaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtgagga |
221 |
Q |
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||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| | || || ||| |||||||||||||||||| |
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| T |
8864002 |
taaattgtttgcaatttgggaggtaagaaaactccttcatatagtgcaaactcaagttttggaagatggtagaaatgcaatctttcaagagtggtgaggg |
8863903 |
T |
|
| Q |
222 |
tgtccatc |
229 |
Q |
| |
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|||||||| |
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| T |
8863902 |
tgtccatc |
8863895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 11146102 - 11146313
Alignment:
| Q |
20 |
atatcatcattatctttaatattcaaatttgtaagagaagtaaggctttggaaacccc---attcaattaatggcggcatctttgttattctcacagatg |
116 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11146102 |
atatcatcattatcttcaattttcaaatttgtaagagaagtaaggctttggaaacccccccattcaattaatggcggcatctttgttattctcacagatg |
11146201 |
T |
|
| Q |
117 |
taatagaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggt |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| || |
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| T |
11146202 |
caatagaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgacaactctagttttggaagatggcggagactcaaactttcaagagttgt |
11146301 |
T |
|
| Q |
217 |
gaggatgtccat |
228 |
Q |
| |
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|||| ||||||| |
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| T |
11146302 |
gagggtgtccat |
11146313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 10892124 - 10891915
Alignment:
| Q |
20 |
atatcatcattatctttaatattcaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaa |
119 |
Q |
| |
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|||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
10892124 |
atatcatcattatctttaatatacaattttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatttttgttattctcacagatttaa |
10892025 |
T |
|
| Q |
120 |
tagaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtgag |
219 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || | |||| ||||| |||||||| |||||| |
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| T |
10892024 |
tagaaatggtttgtaatttgggaggtaagaaaactccttcgcatggtgcaaactctagttttggaagctgatggagactcaaacattcaagagaggtgag |
10891925 |
T |
|
| Q |
220 |
gatgtccatc |
229 |
Q |
| |
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| |||||||| |
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| T |
10891924 |
ggtgtccatc |
10891915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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