View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8627_low_2 (Length: 303)
Name: NF8627_low_2
Description: NF8627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8627_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 38899234 - 38898967
Alignment:
| Q |
24 |
acatgctgctattaaccggcatttatagtgaaatctagttggtggaagtgttggcatgagaacaagtatgtggtttattttaagtccttggcaaccatgt |
123 |
Q |
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| T |
38899234 |
acatgctgctattaaccggcatttatagtgaaatctagttggtggaagtgttggcatgagaacaagtatgtggtttattttaagtccttggcaaccatgt |
38899135 |
T |
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| Q |
124 |
ttctagattactactnnnnnnncttccaaatgactctgcatatatgcaaccattgtagtaaactgggtttgtaagatagcttttgcatctcaacatggac |
223 |
Q |
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| T |
38899134 |
ttctagattactactaaaaaaacttcccaatgactctgcatatatgcaaccattgtagtaaactgggtttgtaagatagcttttgcatctcaacatggac |
38899035 |
T |
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| Q |
224 |
nnnnnnnacccttcatagctagagccatctctagttcctcacaattacttcagtccatagttcatctc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38899034 |
tttttttacccttcatagctagagccatctctagttcctcacaattacttcagtccacagttcatctc |
38898967 |
T |
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