View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8628_high_1 (Length: 440)

Name: NF8628_high_1
Description: NF8628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8628_high_1
NF8628_high_1
[»] chr1 (3 HSPs)
chr1 (262-427)||(19734797-19734962)
chr1 (262-427)||(19730413-19730578)
chr1 (262-306)||(5845343-5845387)
[»] chr7 (1 HSPs)
chr7 (323-418)||(19854962-19855059)
[»] chr2 (1 HSPs)
chr2 (63-112)||(33857627-33857676)
[»] chr5 (1 HSPs)
chr5 (262-305)||(40915369-40915412)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 262 - 427
Target Start/End: Complemental strand, 19734962 - 19734797
Alignment:
Q  262 taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgacaatatccctcaattactctaaaattattttatcattatgt 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19734962 taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgataatatccctcaattactctaaaattattttatcattatgt 19734863  T
Q  362 gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgcatct 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19734862 gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgcatct 19734797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 262 - 427
Target Start/End: Complemental strand, 19730578 - 19730413
Alignment:
Q  262 taaaggagtaatatcttagtcattcatggtgcaatacttttgcaataaaactcagttgacaatatccctcaattactctaaaattattttatcattatgt 361  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19730578 taaaggagtaatatcttagtcattcatgctgcaatacttttgcaataaaactcagttgacaatatcccttaattactctaaaattattttatcattatgt 19730479  T
Q  362 gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtactgtgcatct 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19730478 gtcatttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtattgtgcatct 19730413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 5845387 - 5845343
Alignment:
Q  262 taaaggagtaatatcttagtcattcatggtgcaatacttttgcaa 306  Q
    |||||||||||||| || |||||| ||||||||||| ||||||||    
T  5845387 taaaggagtaatatttttgtcattaatggtgcaatatttttgcaa 5845343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 19855059 - 19854962
Alignment:
Q  323 atatccctcaattactctaaaattattttatcattatgtgt--catttatttgtaataacttgtaattagtctacacgctcctagcttgtacttgtac 418  Q
    ||||| ||||||||||||||||||||  |||||||||||||  ||||| |||||||||||||||||||||| |||| ||||||||||| | |||||||    
T  19855059 atatcactcaattactctaaaattatcctatcattatgtgtatcatttgtttgtaataacttgtaattagtttacatgctcctagcttttccttgtac 19854962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 33857676 - 33857627
Alignment:
Q  63 gtacatgttggaaattttgtagaataaaatccatttgactacgctacttt 112  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33857676 gtacatgttggaatttttgtagaataaaatccatttgactacgctacttt 33857627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 40915412 - 40915369
Alignment:
Q  262 taaaggagtaatatcttagtcattcatggtgcaatacttttgca 305  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  40915412 taaaggagtaatatcttagtcattgatggtgcaatacttttgca 40915369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University